STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caka_2545KEGG: fjo:Fjoh_2514 hypothetical protein. (324 aa)    
Predicted Functional Partners:
Caka_2547
PFAM: glycosyl transferase family 2; KEGG: fjo:Fjoh_2515 glycosyl transferase family protein.
     0.774
Caka_0409
TIGRFAM: Undecaprenyl-phosphate galactose phosphotransferase, WbaP; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; KEGG: dge:Dgeo_2671 undecaprenyl-phosphate galactosephosphotransferase; PFAM: sugar transferase.
  
  
 0.725
Caka_2546
Hypothetical protein; KEGG: ter:Tery_3140 sulfotransferase.
     
 0.700
Caka_2543
TIGRFAM: methyltransferase FkbM family; KEGG: dfe:Dfer_4789 methyltransferase FkbM family.
 
     0.640
Caka_2544
PFAM: glycosyl transferase family 8; KEGG: pmu:PM1139 hypothetical protein.
     
 0.583
Caka_0404
KEGG: syp:SYNPCC7002_A1137 hypothetical protein.
 
     0.558
Caka_0391
Capsular exopolysaccharide family; KEGG: ote:Oter_3243 exopolysaccharide tyrosine- protein kinase; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein.
  
  
 0.452
Caka_2437
TIGRFAM: capsular exopolysaccharide family; KEGG: ote:Oter_1597 exopolysaccharide tyrosine- protein kinase; PFAM: lipopolysaccharide biosynthesis protein.
  
  
 0.452
Caka_1814
KEGG: sus:Acid_6550 UTP--glucose-1-phosphate uridylyltransferase-like protein.
  
     0.443
Caka_0396
PFAM: glycosyl transferase family 2; KEGG: ava:Ava_1377 glycosyl transferase family protein.
  
     0.418
Your Current Organism:
Coraliomargarita akajimensis
NCBI taxonomy Id: 583355
Other names: C. akajimensis DSM 45221, Coraliomargarita akajimensis DSM 45221, Coraliomargarita akajimensis str. DSM 45221, Coraliomargarita akajimensis strain DSM 45221
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.