STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caka_2632PFAM: protein of unknown function DUF214; KEGG: pag:PLES_09121 putative permease. (437 aa)    
Predicted Functional Partners:
Caka_2633
KEGG: app:CAP2UW1_4084 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.966
Caka_2635
KEGG: vfm:VFMJ11_1011 hypothetical protein.
 
  
 0.812
Caka_2631
Hypothetical protein.
       0.668
Caka_2634
KEGG: sse:Ssed_1771 phospholipase D/transphosphatidylase; PFAM: phospholipase D/Transphosphatidylase; SMART: phospholipase D/Transphosphatidylase.
       0.555
Caka_2796
KEGG: swp:swp_1106 hypothetical protein.
  
     0.521
Caka_1645
RNA-binding S4 domain protein; KEGG: pdi:BDI_0331 putative heat shock protein 15; PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein.
   
    0.457
Caka_1803
PFAM: amino acid-binding ACT domain protein; KEGG: ppg:PputGB1_0385 amino acid-binding ACT domain-containing protein.
  
     0.440
Caka_0046
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: rba:RB4310 hypothetical protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  
 0.413
Caka_0663
PFAM: secretion protein HlyD family protein; KEGG: she:Shewmr4_3016 secretion protein HlyD family protein.
  
  
 0.413
Caka_2048
Putative phytochrome sensor protein; PFAM: GAF domain protein; KEGG: cch:Cag_1408 membrane-fusion protein-like.
  
  
 0.413
Your Current Organism:
Coraliomargarita akajimensis
NCBI taxonomy Id: 583355
Other names: C. akajimensis DSM 45221, Coraliomargarita akajimensis DSM 45221, Coraliomargarita akajimensis str. DSM 45221, Coraliomargarita akajimensis strain DSM 45221
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