STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caka_2668PFAM: major facilitator superfamily MFS_1; KEGG: cyn:Cyan7425_1339 major facilitator superfamily MFS_1. (423 aa)    
Predicted Functional Partners:
Caka_0813
KEGG: ach:Achl_0457 hypothetical protein.
  
     0.687
Caka_0900
KEGG: bcv:Bcav_2303 hypothetical protein.
  
     0.677
Caka_2647
KEGG: gvi:gll2872 hypothetical protein.
  
     0.657
Caka_0137
KEGG: aau:AAur_0270 hypothetical protein.
  
     0.651
Caka_2045
Hypothetical protein; KEGG: dol:Dole_0612 hemolysin-type calcium-binding region.
 
     0.612
Caka_2044
KEGG: rce:RC1_0943 the GLUG motif domain protein, putative; TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: filamentous haemagglutinin domain protein.
  
     0.515
Caka_2127
PFAM: Aldose 1-epimerase; KEGG: ote:Oter_1661 aldose 1-epimerase.
 
  
 0.507
vapC-2
PilT protein domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
       0.479
Caka_2667
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
       0.479
Caka_2302
Hypothetical protein; KEGG: dal:Dalk_1881 tetratricopeptide TPR_2 repeat protein.
  
     0.467
Your Current Organism:
Coraliomargarita akajimensis
NCBI taxonomy Id: 583355
Other names: C. akajimensis DSM 45221, Coraliomargarita akajimensis DSM 45221, Coraliomargarita akajimensis str. DSM 45221, Coraliomargarita akajimensis strain DSM 45221
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.