STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caka_2769SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; KEGG: ote:Oter_0601 oxygen-independent coproporphyrinogen III oxidase; PFAM: HemN domain protein; Radical SAM domain protein; Belongs to the anaerobic coproporphyrinogen-III oxidase family. (454 aa)    
Predicted Functional Partners:
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
 
 
 0.927
Caka_1463
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; cytochrome c oxidase, cbb3-type, subunit II; KEGG: ote:Oter_4077 cytochrome c oxidase, cbb3- type, subunit I; PFAM: cytochrome C oxidase mono-heme subunit/FixO; cytochrome c oxidase subunit I; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.920
Caka_0260
Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
    
 0.915
hemF
Coproporphyrinogen oxidase; Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen- IX.
    
 0.915
Caka_0351
Uroporphyrinogen-III decarboxylase-like protein; KEGG: dsy:DSY4756 hypothetical protein; Belongs to the uroporphyrinogen decarboxylase family.
  
 
 0.907
Caka_0353
PFAM: Uroporphyrinogen decarboxylase (URO-D); KEGG: dat:HRM2_47380 UroD; Belongs to the uroporphyrinogen decarboxylase family.
  
 
 0.907
Caka_0025
KEGG: sru:SRU_0322 putative cytochrome-c oxidase; PFAM: cytochrome c oxidase subunit I.
 
  
 0.782
Caka_0026
PFAM: cytochrome C oxidase mono-heme subunit/FixO; KEGG: ote:Oter_3927 cytochrome c oxidase mono-heme subunit/FixO.
 
    0.773
Caka_1466
TIGRFAM: cytochrome c oxidase accessory protein CcoG; KEGG: ote:Oter_4080 cytochrome c oxidase accessory protein CcoG.
 
  
 0.742
Caka_1465
PFAM: cytochrome c class I; KEGG: ote:Oter_4079 cytochrome c oxidase, cbb3- type, subunit III.
 
  
 0.613
Your Current Organism:
Coraliomargarita akajimensis
NCBI taxonomy Id: 583355
Other names: C. akajimensis DSM 45221, Coraliomargarita akajimensis DSM 45221, Coraliomargarita akajimensis str. DSM 45221, Coraliomargarita akajimensis strain DSM 45221
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