STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caka_2818PFAM: FeoA family protein; KEGG: cpb:Cphamn1_0622 FeoA family protein. (74 aa)    
Predicted Functional Partners:
Caka_2817
Ferrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.
 
  
 0.979
Caka_2816
KEGG: gur:Gura_2221 hypothetical protein.
       0.570
Caka_2819
KEGG: ote:Oter_4038 carbonic anhydrase.
       0.570
Caka_2815
Transcriptional regulator with PAS/PAC sensors, AraC family; TIGRFAM: PAS sensor protein; PFAM: PAS fold-4 domain protein; helix-turn-helix- domain containing protein AraC type; KEGG: rba:RB9879 transcription regulator; SMART: Helix-turn-helix, AraC domain.
       0.433
Your Current Organism:
Coraliomargarita akajimensis
NCBI taxonomy Id: 583355
Other names: C. akajimensis DSM 45221, Coraliomargarita akajimensis DSM 45221, Coraliomargarita akajimensis str. DSM 45221, Coraliomargarita akajimensis strain DSM 45221
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