STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caka_2925PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rba:RB6199 dehydrogenase-like protein. (348 aa)    
Predicted Functional Partners:
Caka_2926
KEGG: rba:RB3916 hypothetical protein.
       0.773
Caka_2922
PFAM: oxidoreductase domain protein; KEGG: ote:Oter_3513 oxidoreductase domain- containing protein.
 
     0.721
Caka_2924
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: ami:Amir_3837 xylose isomerase domain protein TIM barrel.
 
    0.715
Caka_1251
PFAM: oxidoreductase domain protein; KEGG: dfe:Dfer_4960 oxidoreductase domain protein.
  
     0.706
Caka_2928
PFAM: oxidoreductase domain protein; KEGG: pdi:BDI_3200 putative dehydrogenase.
 
     0.687
Caka_2535
KEGG: rca:Rcas_0781 glutamine--scyllo-inositol transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
    0.625
Caka_0792
PFAM: oxidoreductase domain protein; KEGG: ote:Oter_3507 oxidoreductase domain- containing protein.
  
     0.613
Caka_0081
PFAM: oxidoreductase domain protein; KEGG: dfe:Dfer_4960 oxidoreductase domain protein.
  
     0.604
Caka_2927
PFAM: protein of unknown function DUF1080; KEGG: cpi:Cpin_7254 protein of unknown function DUF1080.
       0.594
Caka_0960
PFAM: oxidoreductase domain protein; KEGG: dfe:Dfer_4303 oxidoreductase domain protein.
  
     0.571
Your Current Organism:
Coraliomargarita akajimensis
NCBI taxonomy Id: 583355
Other names: C. akajimensis DSM 45221, Coraliomargarita akajimensis DSM 45221, Coraliomargarita akajimensis str. DSM 45221, Coraliomargarita akajimensis strain DSM 45221
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