STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caka_2927PFAM: protein of unknown function DUF1080; KEGG: cpi:Cpin_7254 protein of unknown function DUF1080. (444 aa)    
Predicted Functional Partners:
Caka_2928
PFAM: oxidoreductase domain protein; KEGG: pdi:BDI_3200 putative dehydrogenase.
 
     0.934
Caka_2935
PFAM: protein of unknown function DUF1080; KEGG: rmr:Rmar_1623 protein of unknown function DUF1080.
 
     0.806
Caka_2934
PFAM: oxidoreductase domain protein; KEGG: ote:Oter_3511 oxidoreductase domain- containing protein.
 
     0.804
Caka_0090
PFAM: protein of unknown function DUF1080; KEGG: dfe:Dfer_3234 protein of unknown function DUF1080.
  
     0.772
Caka_0639
PFAM: protein of unknown function DUF1080; KEGG: sus:Acid_3088 hypothetical protein.
  
     0.772
Caka_0645
PFAM: protein of unknown function DUF1080; KEGG: sus:Acid_2087 hypothetical protein.
  
     0.772
Caka_0420
PFAM: oxidoreductase domain protein; KEGG: pdi:BDI_3200 putative dehydrogenase.
  
     0.771
Caka_0491
PFAM: oxidoreductase domain protein; KEGG: ote:Oter_3511 oxidoreductase domain- containing protein.
  
     0.771
Caka_0641
PFAM: protein of unknown function DUF1080; KEGG: sus:Acid_3088 hypothetical protein.
  
     0.771
Caka_0557
PFAM: oxidoreductase domain protein; KEGG: pdi:BDI_3200 putative dehydrogenase.
  
     0.770
Your Current Organism:
Coraliomargarita akajimensis
NCBI taxonomy Id: 583355
Other names: C. akajimensis DSM 45221, Coraliomargarita akajimensis DSM 45221, Coraliomargarita akajimensis str. DSM 45221, Coraliomargarita akajimensis strain DSM 45221
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.