STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caka_2931PFAM: major facilitator superfamily MFS_1; KEGG: rba:RB3718 signal peptide. (495 aa)    
Predicted Functional Partners:
Caka_0151
PFAM: protein of unknown function DUF1549; KEGG: rba:RB6796 hypothetical protein.
  
     0.755
Caka_0088
PFAM: protein of unknown function DUF1080; KEGG: dfe:Dfer_0295 protein of unknown function DUF1080.
  
     0.754
Caka_2935
PFAM: protein of unknown function DUF1080; KEGG: rmr:Rmar_1623 protein of unknown function DUF1080.
 
     0.749
Caka_0706
KEGG: rba:RB5811 hypothetical protein.
  
     0.742
Caka_0150
PFAM: protein of unknown function DUF1501; KEGG: rba:RB6795 hypothetical protein.
  
     0.730
Caka_1895
Hypothetical protein; KEGG: rba:RB9945 signal peptide.
  
     0.723
Caka_1507
KEGG: dfe:Dfer_1544 hypothetical protein.
  
     0.705
Caka_0972
PFAM: protein of unknown function DUF1080; KEGG: rba:RB7152 secreted glycosyl hydrolase.
 
     0.696
Caka_0615
PFAM: protein of unknown function DUF1549; Planctomycete cytochrome C; KEGG: rba:RB8437 cis/trans isomerase.
  
     0.695
Caka_0613
PFAM: coagulation factor 5/8 type domain protein; KEGG: dfe:Dfer_1976 planctomycete cytochrome c.
  
     0.689
Your Current Organism:
Coraliomargarita akajimensis
NCBI taxonomy Id: 583355
Other names: C. akajimensis DSM 45221, Coraliomargarita akajimensis DSM 45221, Coraliomargarita akajimensis str. DSM 45221, Coraliomargarita akajimensis strain DSM 45221
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.