STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caka_2957KEGG: cts:Ctha_0695 pathogenesis-related transcriptional factor and ERF protein. (164 aa)    
Predicted Functional Partners:
Caka_2958
Hypothetical protein.
       0.474
Caka_1348
PFAM: major facilitator superfamily MFS_1; KEGG: dal:Dalk_2237 major facilitator superfamily MFS_1.
  
     0.463
Caka_2027
KEGG: ote:Oter_1659 Smr protein/MutS2; PFAM: Smr protein/MutS2; SMART: Smr protein/MutS2.
  
     0.443
Your Current Organism:
Coraliomargarita akajimensis
NCBI taxonomy Id: 583355
Other names: C. akajimensis DSM 45221, Coraliomargarita akajimensis DSM 45221, Coraliomargarita akajimensis str. DSM 45221, Coraliomargarita akajimensis strain DSM 45221
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.