STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caka_3032KEGG: ote:Oter_2560 hypothetical protein. (153 aa)    
Predicted Functional Partners:
Caka_2291
KEGG: ote:Oter_1762 type IV pilus biogenesis protein.
 
 
 
0.921
Caka_2783
KEGG: hoh:Hoch_0214 hypothetical protein.
     
  0.900
Caka_0253
Hypothetical protein; KEGG: rba:RB8096 signal peptide.
  
     0.706
Caka_1941
PFAM: Fimbrial assembly family protein; KEGG: ote:Oter_2849 fimbrial assembly family protein.
 
  
 0.570
mutL
DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.
       0.564
Caka_3030
PFAM: Amidase; KEGG: ote:Oter_3581 amidase.
       0.563
Caka_3013
KEGG: ote:Oter_3737 type II secretion pathway protein XcpT.
  
     0.558
Caka_3014
KEGG: ote:Oter_3736 hypothetical protein.
  
     0.541
Caka_3033
PFAM: protein of unknown function DUF255; KEGG: protein of unknown function DUF255.
       0.540
Caka_1446
PFAM: Type II secretion system F domain; KEGG: amu:Amuc_1584 type II secretion system protein.
 
    0.433
Your Current Organism:
Coraliomargarita akajimensis
NCBI taxonomy Id: 583355
Other names: C. akajimensis DSM 45221, Coraliomargarita akajimensis DSM 45221, Coraliomargarita akajimensis str. DSM 45221, Coraliomargarita akajimensis strain DSM 45221
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.