STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caka_3109KEGG: sde:Sde_3876 hypothetical protein. (1581 aa)    
Predicted Functional Partners:
Caka_3111
PFAM: VTC domain; KEGG: bba:Bd0821 hypothetical protein.
 
     0.835
Caka_3112
KEGG: scl:sce4692 hypothetical protein.
 
     0.799
Caka_3113
PFAM: secretion protein HlyD family protein; KEGG: scl:sce7839 hypothetical protein.
 
 
 0.730
Caka_2048
Putative phytochrome sensor protein; PFAM: GAF domain protein; KEGG: cch:Cag_1408 membrane-fusion protein-like.
 
 
 0.527
Caka_3108
Hypothetical protein.
       0.508
Caka_1814
KEGG: sus:Acid_6550 UTP--glucose-1-phosphate uridylyltransferase-like protein.
  
     0.488
Caka_3110
KEGG: hypothetical protein.
       0.433
Caka_0046
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: rba:RB4310 hypothetical protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 
 0.429
Caka_0663
PFAM: secretion protein HlyD family protein; KEGG: she:Shewmr4_3016 secretion protein HlyD family protein.
  
 
 0.429
Caka_1244
PFAM: glycosyl transferase family 28; Glycosyltransferase 28 domain; KEGG: hau:Haur_4524 glycosyl transferase family protein.
  
     0.417
Your Current Organism:
Coraliomargarita akajimensis
NCBI taxonomy Id: 583355
Other names: C. akajimensis DSM 45221, Coraliomargarita akajimensis DSM 45221, Coraliomargarita akajimensis str. DSM 45221, Coraliomargarita akajimensis strain DSM 45221
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.