STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpl24eLSU ribosomal protein L24E; Binds to the 23S rRNA. (59 aa)    
Predicted Functional Partners:
rps28e
COGs: COG2053 Ribosomal protein S28E/S33; InterPro IPR000289; KEGG: smr:Smar_0826 30S ribosomal protein S28e; PFAM: Ribosomal protein S28e; SPTR: A3DMR7 SSU ribosomal protein S28E; PFAM: Ribosomal protein S28e; Belongs to the eukaryotic ribosomal protein eS28 family.
 
 
 0.999
rpl13e
COGs: COG4352 Ribosomal protein L13E; KEGG: ape:APE_0537a 50S ribosomal protein L13e; SPTR: Q9YEN9 50S ribosomal protein L13e; PFAM: Ribosomal protein L13e; Belongs to the eukaryotic ribosomal protein eL13 family.
   
 0.998
Igag_0127
COGs: COG0089 Ribosomal protein L23; InterPro IPR013025:IPR001014; KEGG: tne:Tneu_0815 ribosomal protein L25/L23; PFAM: Ribosomal protein L25/L23; SPTR: B1YD90 50S ribosomal protein L23; PFAM: Ribosomal protein L23; Belongs to the universal ribosomal protein uL23 family.
   
 0.998
rpl3
LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.
   
 0.998
rpl44e
LSU ribosomal protein L44E; Binds to the 23S rRNA.
  
 0.998
rpl22
LSU ribosomal protein L22P; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.
   
 0.998
rpl29
LSU ribosomal protein L29P; InterPro IPR001854; KEGG: dka:DKAM_1168 50S ribosomal protein L29P; PFAM: ribosomal protein L29; SPTR: B8D5W3 50S ribosomal protein L29P; TIGRFAM: ribosomal protein L29; PFAM: Ribosomal L29 protein; TIGRFAM: ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
   
 0.998
rpl24
LSU ribosomal protein L24P; Located at the polypeptide exit tunnel on the outside of the subunit.
   
 0.998
rpl6
LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
   
 0.998
rpl32e
COGs: COG1717 Ribosomal protein L32E; InterPro IPR001515:IPR018263; KEGG: iho:Igni_1279 50S ribosomal protein L32e; PFAM: Ribosomal protein L32e; SPTR: A8AC03 LSU ribosomal protein L32E; PFAM: Ribosomal protein L32; Belongs to the eukaryotic ribosomal protein eL32 family.
   
 0.998
Your Current Organism:
Ignisphaera aggregans
NCBI taxonomy Id: 583356
Other names: I. aggregans DSM 17230, Ignisphaera aggregans DSM 17230, Ignisphaera aggregans str. DSM 17230, Ignisphaera aggregans strain DSM 17230
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