STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Igag_0219KEGG: sto:ST1067 hypothetical protein; SPTR: Q972R8 Putative uncharacterized protein ST1067. (255 aa)    
Predicted Functional Partners:
Igag_0220
ABC transporter related; COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components; InterPro IPR003439:IPR003593; KEGG: pfu:PF0005 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Q8U4R8 ABC transporter, ATP-binding protein.
       0.773
Igag_0221
Amidohydrolase; COGs: COG0402 Cytosine deaminase and related metal-dependent hydrolase; InterPro IPR006680:IPR000253; KEGG: smr:Smar_0216 amidohydrolase; PFAM: amidohydrolase; SPTR: A3DL19 Amidohydrolase.
       0.538
Igag_0222
COGs: COG2016 RNA-binding protein (contains PUA domain); InterPro IPR002478:IPR004521; KEGG: mja:MJ1432 hypothetical protein; PFAM: PUA domain containing protein; SPTR: C5TQJ7 PUA domain containing protein; PFAM: PUA domain; TIGRFAM: uncharacterized domain 2.
       0.400
Your Current Organism:
Ignisphaera aggregans
NCBI taxonomy Id: 583356
Other names: I. aggregans DSM 17230, Ignisphaera aggregans DSM 17230, Ignisphaera aggregans str. DSM 17230, Ignisphaera aggregans strain DSM 17230
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