STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Igag_0885Glycoside hydrolase family 12; InterPro IPR002594; KEGG: sso:SSO1354 endoglucanase precursor; PFAM: glycoside hydrolase family 12; SPTR: Q97YG7 Endoglucanase; PFAM: Glycosyl hydrolase family 12. (360 aa)    
Predicted Functional Partners:
Igag_0886
Protein of unknown function DUF437; COGs: COG2411 conserved hypothetical protein; InterPro IPR007374; KEGG: tko:TK0056 hypothetical protein; PFAM: protein of unknown function DUF437; SPTR: Q5JEG9 Putative uncharacterized protein; PFAM: ASCH domain.
       0.443
Igag_0887
Transcriptional regulator, ArsR family; InterPro IPR001845:IPR013196; KEGG: cma:Cmaq_0138 regulatory protein ArsR; PFAM: regulatory protein ArsR; Helix-turn-helix type 11 domain protein; SMART: regulatory protein ArsR; SPTR: A8MA56 Regulatory protein ArsR; PFAM: Bacterial regulatory protein, arsR family.
       0.417
Your Current Organism:
Ignisphaera aggregans
NCBI taxonomy Id: 583356
Other names: I. aggregans DSM 17230, Ignisphaera aggregans DSM 17230, Ignisphaera aggregans str. DSM 17230, Ignisphaera aggregans strain DSM 17230
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.