Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADH59804.1KEGG: chy:CHY_1677 hypothetical protein. (92 aa)    
Predicted Functional Partners:
ADH59803.1
KEGG: cpv:cgd7_5130 hypothetical protein.
       0.762
ADH59805.1
KEGG: chy:CHY_2147 hypothetical protein.
       0.584
ADH59802.1
PFAM: protein of unknown function UPF0236; KEGG: tte:TTE2708 hypothetical protein.
       0.562
ADH59800.1
KEGG: chy:CHY_1679 prophage LambdaCh01, portal protein.
       0.437
ADH59801.1
PFAM: minor capsid 2 protein; KEGG: chy:CHY_1678 prophage LambdaCh01, head morphogenesis protein SPP1.
       0.437
ADH59806.1
Hypothetical protein.
       0.410
Your Current Organism:
Thermoanaerobacter mathranii
NCBI taxonomy Id: 583358
Other names: T. mathranii subsp. mathranii str. A3, Thermoanaerobacter mathranii subsp. mathranii A3, Thermoanaerobacter mathranii subsp. mathranii DSM 11426, Thermoanaerobacter mathranii subsp. mathranii str. A3, Thermoanaerobacter mathranii subsp. mathranii strain A3
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