Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADH59852.1KEGG: csc:Csac_2630 hypothetical protein. (141 aa)    
Predicted Functional Partners:
ADH59853.1
KEGG: csc:Csac_2629 hypothetical protein.
       0.787
ADH59854.1
SAF domain protein; KEGG: dae:Dtox_1485 Flp pilus assembly protein CpaB; PFAM: SAF domain protein; SMART: SAF domain protein.
       0.778
ADH59855.1
KEGG: ate:Athe_2770 transcriptional regulator.
       0.636
ADH59856.1
PFAM: peptidase A24A prepilin type IV; KEGG: tte:TTE2059 hypothetical protein.
       0.580
ADH59857.1
TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: tpd:Teth39_0041 metal dependent phosphohydrolase; SMART: metal-dependent phosphohydrolase HD region.
       0.580
ADH59858.1
PFAM: StbA family protein; KEGG: tpd:Teth39_0044 StbA family protein.
       0.580
ADH59859.1
KEGG: pcb:PC301248.00.0 hypothetical protein.
       0.580
ADH59860.1
KEGG: tpd:Teth39_0045 hypothetical protein.
       0.580
ADH59851.1
KEGG: cac:CAC1978 hypothetical protein; manually curated; PFAM: Type II secretion system F domain.
       0.418
ADH59850.1
KEGG: aoe:Clos_1906 hypothetical protein.
       0.415
Your Current Organism:
Thermoanaerobacter mathranii
NCBI taxonomy Id: 583358
Other names: T. mathranii subsp. mathranii str. A3, Thermoanaerobacter mathranii subsp. mathranii A3, Thermoanaerobacter mathranii subsp. mathranii DSM 11426, Thermoanaerobacter mathranii subsp. mathranii str. A3, Thermoanaerobacter mathranii subsp. mathranii strain A3
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