Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ADH59866.1KEGG: tpd:Teth39_0054 hypothetical protein. (285 aa)    
Predicted Functional Partners:
ADH59868.1
KEGG: tpd:Teth39_0059 hypothetical protein.
 
     0.958
ADH59869.1
KEGG: tpd:Teth39_0060 type IV secretory pathway VirB4 components-like protein.
 
     0.940
ADH59864.1
PFAM: TRAG family protein; KEGG: tpd:Teth39_0052 TraG family protein.
 
     0.927
ADH59863.1
KEGG: tpd:Teth39_0051 hypothetical protein.
 
     0.915
ADH59870.1
PFAM: Peptidase M23; KEGG: tpd:Teth39_0061 peptidase M23B.
 
     0.826
ADH59867.1
Manually curated; KEGG: tpd:Teth39_0055 hypothetical protein.
       0.792
ADH59878.1
KEGG: csc:Csac_2638 PKD domain-containing protein; PFAM: PKD domain containing protein; SMART: PKD domain containing protein.
 
     0.767
ADH59858.1
PFAM: StbA family protein; KEGG: tpd:Teth39_0044 StbA family protein.
  
     0.763
ADH59851.1
KEGG: cac:CAC1978 hypothetical protein; manually curated; PFAM: Type II secretion system F domain.
 
     0.734
ADH59854.1
SAF domain protein; KEGG: dae:Dtox_1485 Flp pilus assembly protein CpaB; PFAM: SAF domain protein; SMART: SAF domain protein.
 
     0.705
Your Current Organism:
Thermoanaerobacter mathranii
NCBI taxonomy Id: 583358
Other names: T. mathranii subsp. mathranii str. A3, Thermoanaerobacter mathranii subsp. mathranii A3, Thermoanaerobacter mathranii subsp. mathranii DSM 11426, Thermoanaerobacter mathranii subsp. mathranii str. A3, Thermoanaerobacter mathranii subsp. mathranii strain A3
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