Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADH59895.1RNA-binding S4 domain protein; KEGG: tpd:Teth39_2189 pseudouridine synthase; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; SMART: RNA-binding S4 domain protein; Belongs to the pseudouridine synthase RsuA family. (240 aa)    
Predicted Functional Partners:
cmk
KEGG: tpd:Teth39_1167 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region; shikimate kinase.
 
  
 0.748
der
Ribosome-associated GTPase EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
 
  
 0.645
ADH59897.1
PFAM: glycosidase PH1107-related; KEGG: tpd:Teth39_2181 glycosidase, PH1107-related.
 
     0.610
ADH59898.1
PFAM: glycosidase PH1107-related; KEGG: tpd:Teth39_2180 glycosidase, PH1107-related.
 
     0.588
scpB
Chromosome segregation and condensation protein, ScpB; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.
  
  
 0.587
ADH59896.1
Endo-beta-mannanase-like protein; Manually curated; KEGG: tpd:Teth39_2182 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
       0.560
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
 
   
 0.550
ADH61737.1
KEGG: tpd:Teth39_0245 small GTP-binding protein; TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related.
  
  
 0.497
ADH61073.1
Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
  
 0.435
ADH61506.1
TIGRFAM: RNA methylase, NOL1/NOP2/sun family; KEGG: tex:Teth514_0979 NOL1/NOP2/sun family RNA methylase; PFAM: Fmu (Sun) domain protein.
  
  
 0.430
Your Current Organism:
Thermoanaerobacter mathranii
NCBI taxonomy Id: 583358
Other names: T. mathranii subsp. mathranii str. A3, Thermoanaerobacter mathranii subsp. mathranii A3, Thermoanaerobacter mathranii subsp. mathranii DSM 11426, Thermoanaerobacter mathranii subsp. mathranii str. A3, Thermoanaerobacter mathranii subsp. mathranii strain A3
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