STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADH60546.1KEGG: tex:Teth514_2191 sigma-54 factor interaction domain-containing protein; PFAM: sigma-54 factor interaction domain-containing protein; SMART: AAA ATPase. (446 aa)    
Predicted Functional Partners:
ADH61273.1
KEGG: tpd:Teth39_0729 RNA polymerase, sigma 54 subunit, RpoN; TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 DNA-binding domain protein; sigma-54 factor core-binding region; sigma-54 factor.
 
 
 
 0.922
ADH61207.1
KEGG: tex:Teth514_2039 hypothetical protein.
   
 
 0.632
ADH60547.1
KEGG: tpd:Teth39_1508 cell wall hydrolase, SleB; PFAM: cell wall hydrolase SleB; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM.
       0.460
ADH60398.1
PFAM: phosphotransferase system lactose/cellobiose-specific IIB subunit; KEGG: tpd:Teth39_1699 phosphotransferase system, lactose/cellobiose-specific IIB subunit.
 
     0.404
ADH60414.1
PFAM: phosphotransferase system lactose/cellobiose-specific IIB subunit; KEGG: cbk:CLL_A1499 PTS system, lactose/cellobiose-specific family, IIB component.
 
     0.403
Your Current Organism:
Thermoanaerobacter mathranii
NCBI taxonomy Id: 583358
Other names: T. mathranii subsp. mathranii str. A3, Thermoanaerobacter mathranii subsp. mathranii A3, Thermoanaerobacter mathranii subsp. mathranii DSM 11426, Thermoanaerobacter mathranii subsp. mathranii str. A3, Thermoanaerobacter mathranii subsp. mathranii strain A3
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