Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADH60642.1TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; PFAM: Soluble ligand binding domain; helix-hairpin-helix motif; KEGG: tpd:Teth39_1421 helix-hairpin-helix repeat-containing competence protein ComEA; SMART: Helix-hairpin-helix DNA-binding class 1. (201 aa)    
Predicted Functional Partners:
ADH60831.1
PFAM: Type II secretion system F domain; KEGG: tpd:Teth39_1069 type II secretion system protein.
  
  
 0.834
ADH60655.1
TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; KEGG: tpd:Teth39_1406 DNA internalization-related competence protein ComEC/Rec2; SMART: beta-lactamase domain protein.
 
  
 0.811
ADH60829.1
KEGG: tpd:Teth39_1067 type II secretion system protein E; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase.
  
  
 0.802
ADH60643.1
KEGG: tte:TTE0927 hypothetical protein.
  
    0.626
ADH60312.1
PFAM: phosphoribosyltransferase; KEGG: tpd:Teth39_1788 phosphoribosyltransferase.
  
  
 0.608
ADH59856.1
PFAM: peptidase A24A prepilin type IV; KEGG: tte:TTE2059 hypothetical protein.
   
  
 0.607
ADH60833.1
Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
   
  
 0.607
ADH59972.1
PFAM: CMP/dCMP deaminase zinc-binding; KEGG: tpd:Teth39_2103 CMP/dCMP deaminase, zinc-binding.
  
  
 0.591
ADH60641.1
KEGG: tpd:Teth39_1422 serine-type D-Ala-D-Ala carboxypeptidase; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; Belongs to the peptidase S11 family.
     
 0.589
cinA
Competence/damage-inducible protein CinA; KEGG: tpd:Teth39_1192 competence damage-inducible protein A; TIGRFAM: competence/damage-inducible protein CinA; PFAM: CinA domain protein; molybdopterin binding domain; Belongs to the CinA family.
     
 0.587
Your Current Organism:
Thermoanaerobacter mathranii
NCBI taxonomy Id: 583358
Other names: T. mathranii subsp. mathranii str. A3, Thermoanaerobacter mathranii subsp. mathranii A3, Thermoanaerobacter mathranii subsp. mathranii DSM 11426, Thermoanaerobacter mathranii subsp. mathranii str. A3, Thermoanaerobacter mathranii subsp. mathranii strain A3
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