Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ybeYProtein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. (159 aa)    
Predicted Functional Partners:
era
GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
  
 0.996
ADH60695.1
PFAM: PhoH family protein; KEGG: tpd:Teth39_1369 PhoH family protein.
  
  
 0.988
ADH60698.1
KEGG: tpd:Teth39_1366 diacylglycerol kinase; PFAM: diacylglycerol kinase; phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related.
 
  
 0.985
ADH60275.1
Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.
 
  
 0.944
ADH60696.1
TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase 7TM extracellular region; metal-dependent phosphohydrolase 7TM intracellular region; metal-dependent phosphohydrolase HD sub domain; KEGG: tpd:Teth39_1368 7TM receptor with intracellular metal dependent phosphohydrolase; SMART: metal-dependent phosphohydrolase HD region.
  
  
 0.877
rpsQ
30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
 0.866
ADH60694.1
Sporulation protein YqfD; KEGG: tpd:Teth39_1370 putative stage IV sporulation YqfD; TIGRFAM: sporulation protein YqfD; PFAM: putative stage IV sporulation YqfD.
       0.851
rplQ
Ribosomal protein L17; KEGG: tpd:Teth39_0403 50S ribosomal protein L17; TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17.
 
 
 
 0.851
ADH60693.1
Sporulation protein YqfC; KEGG: tpd:Teth39_1371 hypothetical protein; TIGRFAM: sporulation protein YqfC; PFAM: protein of unknown function DUF1429.
       0.835
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
  
 0.817
Your Current Organism:
Thermoanaerobacter mathranii
NCBI taxonomy Id: 583358
Other names: T. mathranii subsp. mathranii str. A3, Thermoanaerobacter mathranii subsp. mathranii A3, Thermoanaerobacter mathranii subsp. mathranii DSM 11426, Thermoanaerobacter mathranii subsp. mathranii str. A3, Thermoanaerobacter mathranii subsp. mathranii strain A3
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