Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
xseBExodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. (75 aa)    
Predicted Functional Partners:
xseA
Exodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.
  
 0.999
ADH60863.1
PFAM: Polyprenyl synthetase; KEGG: tex:Teth514_1538 polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
  
  
 0.940
folD
Methylenetetrahydrofolate dehydrogenase (NADP(+)); Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.
  
    0.874
nusB
NusB antitermination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.
  
  
 0.865
ADH60858.1
PFAM: protein of unknown function DUF322; KEGG: tpd:Teth39_1096 hypothetical protein.
       0.676
ADH60855.1
KEGG: tex:Teth514_1530 hypothetical protein; TIGRFAM: stage III sporulation protein AF; PFAM: Sporulation stage III protein AF.
 
     0.666
ADH60857.1
KEGG: tex:Teth514_1532 hypothetical protein.
       0.560
ADH60856.1
TIGRFAM: stage III sporulation protein AG; KEGG: tpd:Teth39_1094 hypothetical protein.
       0.544
ADH60854.1
KEGG: tex:Teth514_1529 hypothetical protein; TIGRFAM: stage III sporulation protein AE; PFAM: Sporulation stage III protein AE.
       0.528
ADH60853.1
KEGG: tpd:Teth39_1091 hypothetical protein; TIGRFAM: stage III sporulation protein AD; PFAM: Sporulation stage III protein AD.
       0.522
Your Current Organism:
Thermoanaerobacter mathranii
NCBI taxonomy Id: 583358
Other names: T. mathranii subsp. mathranii str. A3, Thermoanaerobacter mathranii subsp. mathranii A3, Thermoanaerobacter mathranii subsp. mathranii DSM 11426, Thermoanaerobacter mathranii subsp. mathranii str. A3, Thermoanaerobacter mathranii subsp. mathranii strain A3
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