Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADH61844.1KEGG: tte:TTE2612 hypothetical protein. (43 aa)    
Predicted Functional Partners:
ADH61843.1
KEGG: tte:TTE2612 hypothetical protein.
       0.773
ADH61845.1
TIGRFAM: D-3-phosphoglycerate dehydrogenase; KEGG: tex:Teth514_2306 D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; amino acid-binding ACT domain protein.
       0.568
ADH61846.1
PFAM: aminotransferase class V; KEGG: tpd:Teth39_0144 alanine--glyoxylate transaminase.
       0.568
ADH61842.1
KEGG: ckr:CKR_2585 hypothetical protein; PFAM: RNA-metabolising metallo-beta-lactamase; SMART: beta-lactamase domain protein.
       0.487
Your Current Organism:
Thermoanaerobacter mathranii
NCBI taxonomy Id: 583358
Other names: T. mathranii subsp. mathranii str. A3, Thermoanaerobacter mathranii subsp. mathranii A3, Thermoanaerobacter mathranii subsp. mathranii DSM 11426, Thermoanaerobacter mathranii subsp. mathranii str. A3, Thermoanaerobacter mathranii subsp. mathranii strain A3
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