Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADH61865.1KEGG: tpd:Teth39_0122 CRISPR-associated Csh1 family protein; TIGRFAM: CRISPR-associated protein, TM1802 family; CRISPR-associated protein, Csh1 family; PFAM: CRISPR-associated protein TM1802. (592 aa)    
Predicted Functional Partners:
ADH61864.1
KEGG: tpd:Teth39_0123 CRISPR-associated Csh2 family protein; TIGRFAM: CRISPR-associated protein, Csh2 family; CRISPR-associated protein, CT1132 family; PFAM: CRISPR-associated protein TM1801.
 
    0.966
ADH61863.1
KEGG: tpd:Teth39_0124 CRISPR-associated Cas5 family Hmari subtype protein; TIGRFAM: CRISPR-associated protein Cas5, Hmari subtype; CRISPR-associated protein Cas5; PFAM: protein of unknown function DUF522.
 
    0.960
ADH61862.1
TIGRFAM: CRISPR-associated helicase Cas3; PFAM: helicase domain protein; KEGG: tpd:Teth39_0125 CRISPR-associated helicase Cas3; SMART: DEAD-like helicase.
 
     0.946
ADH61866.1
CRISPR-associated protein Cas6; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA).
 
     0.908
ADH61429.1
KEGG: tte:TTE1944 hypothetical protein.
  
     0.596
ADH59992.1
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
  
     0.527
ADH60486.1
KEGG: tpd:Teth39_1602 CRISPR-associated RAMP Cmr1 family protein; TIGRFAM: CRISPR-associated RAMP protein, Cmr1 family; PFAM: DNA polymerase beta domain protein region; protein of unknown function DUF324.
 
     0.519
Your Current Organism:
Thermoanaerobacter mathranii
NCBI taxonomy Id: 583358
Other names: T. mathranii subsp. mathranii str. A3, Thermoanaerobacter mathranii subsp. mathranii A3, Thermoanaerobacter mathranii subsp. mathranii DSM 11426, Thermoanaerobacter mathranii subsp. mathranii str. A3, Thermoanaerobacter mathranii subsp. mathranii strain A3
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