STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gltC_5HTH-type transcriptional regulator GltC; Belongs to the LysR transcriptional regulatory family. (302 aa)    
Predicted Functional Partners:
catM
HTH-type transcriptional regulator CatM; Belongs to the LysR transcriptional regulatory family.
  
     0.759
hcaR_7
Hca operon transcriptional activator; Belongs to the LysR transcriptional regulatory family.
  
     0.755
benM_3
HTH-type transcriptional regulator BenM; Belongs to the LysR transcriptional regulatory family.
  
     0.746
hcaR_5
Hca operon transcriptional activator; Belongs to the LysR transcriptional regulatory family.
  
     0.745
hcaR_4
Hca operon transcriptional activator; Belongs to the LysR transcriptional regulatory family.
  
     0.741
kbl
2-amino-3-ketobutyrate coenzyme A ligase; Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA.
 
     0.735
cysL_3
HTH-type transcriptional regulator CysL; Belongs to the LysR transcriptional regulatory family.
  
     0.728
cmpR
HTH-type transcriptional activator CmpR; Belongs to the LysR transcriptional regulatory family.
  
     0.715
benM_1
HTH-type transcriptional regulator BenM; Belongs to the LysR transcriptional regulatory family.
  
     0.690
leuO_2
HTH-type transcriptional regulator LeuO; Belongs to the LysR transcriptional regulatory family.
  
     0.664
Your Current Organism:
Streptomyces platensis
NCBI taxonomy Id: 58346
Other names: ATCC 13865, ATCC 23948, BCRC 11898, CBS 310.56, CBS 932.68, CCRC 11898, CCRC:11898, CCUG 11118, DSM 40041, IFO 12901, ISP 5041, JCM 4189, JCM 4662, NBRC 12901, NCAIM B.01481, NCIMB 9607, NRRL 2364, NRRL B-5486, NRRL-ISP 5041, S. platensis, Streptomyces sp. CB00739
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