Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| OSY45829.1 | OSY46970.1 | BG653_02593 | BG653_01706 | MerR family regulatory protein. | Hypothetical protein. | 0.516 |
| OSY45829.1 | accA | BG653_02593 | BG653_05887 | MerR family regulatory protein. | Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha. | 0.744 |
| OSY45829.1 | cph2_2 | BG653_02593 | BG653_03638 | MerR family regulatory protein. | Phytochrome-like protein cph2. | 0.471 |
| OSY45829.1 | dnaJ_1 | BG653_02593 | BG653_03809 | MerR family regulatory protein. | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] | 0.464 |
| OSY45829.1 | gmr | BG653_02593 | BG653_03343 | MerR family regulatory protein. | Cyclic di-GMP phosphodiesterase Gmr. | 0.470 |
| OSY45829.1 | rcsC | BG653_02593 | BG653_03435 | MerR family regulatory protein. | Sensor histidine kinase RcsC. | 0.486 |
| OSY45829.1 | rpoA | BG653_02593 | BG653_03988 | MerR family regulatory protein. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.584 |
| OSY45829.1 | rpoB | BG653_02593 | BG653_03952 | MerR family regulatory protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.627 |
| OSY45829.1 | rpoC | BG653_02593 | BG653_03953 | MerR family regulatory protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.584 |
| OSY45829.1 | rpoZ | BG653_02593 | BG653_02670 | MerR family regulatory protein. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.584 |
| OSY46970.1 | OSY45829.1 | BG653_01706 | BG653_02593 | Hypothetical protein. | MerR family regulatory protein. | 0.516 |
| accA | OSY45829.1 | BG653_05887 | BG653_02593 | Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha. | MerR family regulatory protein. | 0.744 |
| accA | rcsC | BG653_05887 | BG653_03435 | Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha. | Sensor histidine kinase RcsC. | 0.712 |
| accA | rpoB | BG653_05887 | BG653_03952 | Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.416 |
| cph2_2 | OSY45829.1 | BG653_03638 | BG653_02593 | Phytochrome-like protein cph2. | MerR family regulatory protein. | 0.471 |
| cph2_2 | gmr | BG653_03638 | BG653_03343 | Phytochrome-like protein cph2. | Cyclic di-GMP phosphodiesterase Gmr. | 0.999 |
| cph2_2 | rcsC | BG653_03638 | BG653_03435 | Phytochrome-like protein cph2. | Sensor histidine kinase RcsC. | 0.999 |
| dnaJ_1 | OSY45829.1 | BG653_03809 | BG653_02593 | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] | MerR family regulatory protein. | 0.464 |
| dnaJ_1 | rcsC | BG653_03809 | BG653_03435 | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] | Sensor histidine kinase RcsC. | 0.654 |
| dnaJ_1 | rpoB | BG653_03809 | BG653_03952 | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.502 |
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