STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AND14561.1ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (387 aa)    
Predicted Functional Partners:
AND14563.1
Secretion protein HlyD; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.948
AND14562.1
Antibiotic ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
0.858
ybhS_1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.660
AND13705.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.651
yehT
Two-component system response regulator YehT; Unknown function; when overproduced it confers drug-resistance; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.588
AND14564.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.577
hlyD-2
Secretion protein HlyD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.455
yetF
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.450
ybhF_3
Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.435
AND11364.1
NYN domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.432
Your Current Organism:
Proteus mirabilis
NCBI taxonomy Id: 584
Other names: ATCC 29906, CCUG 26767, CIP 103181, DSM 4479, LMG 3257, LMG:3257, NCTC 11938, P. mirabilis
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