STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
Apau_0064Transcriptional regulator, LysR family; COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119:IPR018054:IPR011991; KEGG: bld:BLi03173 YwqM; PFAM: LysR substrate-binding; regulatory protein LysR; SPTR: Q65FY0 Probable transcriptional regulator YwqM; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain. (325 aa)    
Predicted Functional Partners:
Apau_0063
KEGG: tai:Taci_0032 hypothetical protein; SPTR: D1B7L9 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3298).
       0.671
Apau_0065
COGs: COG0531 Amino acid transporter; InterPro IPR004841:IPR002293; KEGG: dba:Dbac_3457 amino acid permease-associated region; PFAM: amino acid permease-associated region; SPTR: C7LQM3 Amino acid permease-associated region.
 
   
 0.595
Apau_0627
Transcriptional regulator, AraC family; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR003313:IPR009057:IPR000005; KEGG: dvm:DvMF_0806 transcriptional regulator, AraC family; PFAM: AraC protein arabinose-binding/dimerisation; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: B8DL59 Transcriptional regulator, AraC family; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; AraC-like ligand binding domain.
  
  
 0.509
Apau_0451
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); COGs: COG5001 signal transduction protein containing a membrane domain an EAL and a GGDEF domain; InterProIPR000014:IPR001633:IPR000160:IPR013163:IPR 013767; KEGG: dar:Daro_1909 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); PFAM: EAL domain protein; GGDEF domain containing protein; Cache type 2 domain protein; PAS fold domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; SPTR: Q47ES6 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S); TIGRFAM: di [...]
  
   
 0.452
Apau_0689
ABC transporter related protein; COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components; InterPro IPR003439:IPR003593:IPR017871; KEGG: tai:Taci_1601 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: D1B731 ABC transporter related protein; PFAM: ABC transporter; Belongs to the ABC transporter superfamily.
  
 
 0.444
Apau_0379
COGs: COG0642 Signal transduction histidine kinase; InterProIPR005467:IPR004358:IPR003018:IPR000014:IPR 003661:IPR003594:IPR009082:IPR011006:IPR013656; KEGG: chl:Chy400_0428 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; PAS fold-4 domain protein; PRIAM: Histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; PAS domain containing protein; SPTR: B9LID2 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: GAF domain; Histidine kina [...]
   
 
 0.442
Apau_2164
COGs: COG0642 Signal transduction histidine kinase; InterProIPR003594:IPR011006:IPR009082:IPR008207:IPR 005467:IPR001789:IPR000014:IPR004358:IPR003661:IPR013656; KEGG: dma:DMR_28640 two-component hybrid sensor and regulator; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; response regulator receiver; Hpt domain protein; SMART: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; SPTR: C4XHI1 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: [...]
   
  
 0.410
Apau_2151
Transcriptional regulator, AraC family; COGs: COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain; InterProIPR003313:IPR009057:IPR018062:IPR018060:IPR 012287:IPR013096:IPR000005; KEGG: gym:GYMC10_1335 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; Cupin 2 conserved barrel domain protein; SMART: Helix-turn-helix, AraC domain; SPTR: B2JCL8 Transcriptional regulator, AraC family; PFAM: AraC-like ligand binding domain; Bacterial regulatory helix-turn-helix proteins, AraC family.
  
  
 0.408
Apau_2202
Methyl-accepting chemotaxis sensory transducer; COGs: COG3221 ABC-type phosphate/phosphonate transport system periplasmic component; InterPro IPR004089:IPR005770; KEGG: tai:Taci_0209 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; SPTR: D1B845 Methyl-accepting chemotaxis sensory transducer; TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; PFAM: Methyl-accepting chemotaxis protein (MCP) signaling domain; NMT1/THI5 like; TIGRFAM: phosphate/phosphite/phosphonate ABC transporters, perip [...]
     
 0.408
Your Current Organism:
Aminomonas paucivorans
NCBI taxonomy Id: 584708
Other names: A. paucivorans DSM 12260, Aminomonas paucivorans DSM 12260, Aminomonas paucivorans str. DSM 12260, Aminomonas paucivorans strain DSM 12260
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