STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apau_0107KEGG: ace:Acel_0812 hypothetical protein; SPTR: A0LT25 Putative uncharacterized protein. (1243 aa)    
Predicted Functional Partners:
Apau_0106
KEGG: tai:Taci_1497 hypothetical protein; SPTR: D1B6T1 Putative uncharacterized protein.
 
 
 0.952
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
    
  0.925
Apau_1528
COGs: COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains; InterProIPR002298:IPR020046:IPR020047:IPR001098:IPR 018320:IPR002421:IPR008918:IPR020045:IPR019760; KEGG: tai:Taci_1079 DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; PRIAM: DNA-directed DNA polymerase; SMART: 5'-3' exonuclease; Helix-hairpin-helix domain protein class 2; DNA-directed DNA polymerase; SPTR: D1B5M0 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: 5'-3' exonuclease, C-terminal SAM fold; 5'-3' exonucleas [...]
  
  
 0.876
Apau_0108
COGs: COG2865 transcriptional regulator protein; InterPro IPR007421; KEGG: dat:HRM2_49000 putative transcriptional regulator; PFAM: AAA-4 family protein; SPTR: C0QIK4 Putative transcriptional regulator; PFAM: Divergent AAA domain.
 
     0.831
Apau_0112
PglZ domain protein; InterPro IPR013973; KEGG: tai:Taci_1491 PglZ domain protein; PFAM: PglZ domain protein; SPTR: D1B6S5 PglZ domain protein; PFAM: PglZ domain.
 
    0.796
Apau_0113
KEGG: dol:Dole_0433 hypothetical protein; SPTR: A8ZTH9 Putative uncharacterized protein.
 
     0.792
rnhB
RNase HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
   
  
 0.715
Apau_0481
Silent information regulator protein Sir2; COGs: COG0846 NAD-dependent protein deacetylase SIR2 family; InterPro IPR003000; KEGG: pmo:Pmob_1359 silent information regulator protein Sir2; PFAM: Silent information regulator protein Sir2; SPTR: C1TRP8 NAD-dependent protein deacetylase, SIR2 family; PFAM: Putative zinc ribbon domain; Sir2 family.
   
 
 0.649
Apau_0927
Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
   
  
 0.639
Apau_1830
ATPase; COGs: COG4637 ATPase; KEGG: ava:Ava_3860 ATPase-like; SPTR: C0GVE4 ATPase-like protein.
 
     0.493
Your Current Organism:
Aminomonas paucivorans
NCBI taxonomy Id: 584708
Other names: A. paucivorans DSM 12260, Aminomonas paucivorans DSM 12260, Aminomonas paucivorans str. DSM 12260, Aminomonas paucivorans strain DSM 12260
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