STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
Apau_0120Amino acid carrier protein; COGs: COG1115 Na+/alanine symporter; InterPro IPR001463; KEGG: tai:Taci_0128 amino acid carrier protein; PFAM: sodium:alanine symporter; SPTR: D1B7W5 Amino acid carrier protein; TIGRFAM: amino acid carrier protein; PFAM: Sodium:alanine symporter family; TIGRFAM: amino acid carrier protein. (503 aa)    
Predicted Functional Partners:
Apau_0119
Dimethylargininase; COGs: COG1834 N-Dimethylarginine dimethylaminohydrolase; InterPro IPR003198; KEGG: shi:Shel_22890 N-dimethylarginine dimethylaminohydrolase; PFAM: amidinotransferase; PRIAM: Dimethylargininase; SPTR: C7N177 N-dimethylarginine dimethylaminohydrolase; PFAM: Amidinotransferase.
  
    0.723
Apau_0121
Transcriptional regulator, AsnC family; COGs: COG1522 Transcriptional regulators; InterProIPR019887:IPR019885:IPR011008:IPR019888:IPR 000485:IPR011991; KEGG: tai:Taci_0129 transcriptional regulator, AsnC family; PFAM: Transcription regulator, AsnC-type-like; SMART: Transcription regulator, AsnC-type; SPTR: D1B7W6 Transcriptional regulator, AsnC family; PFAM: AsnC family.
       0.472
Apau_0122
Amidohydrolase; COGs: COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase; InterPro IPR010168:IPR002933:IPR011650:IPR017439; KEGG: mta:Moth_1962 peptidase M20D, amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; PRIAM: Hippurate hydrolase; SPTR: D1CB03 Amidohydrolase; TIGRFAM: amidohydrolase; PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: amidohydrolase.
       0.468
Apau_0116
ABC transporter related protein; COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components; InterPro IPR003439:IPR017871:IPR003593; KEGG: sat:SYN_00216 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Q2LY12 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components; PFAM: ABC transporter.
       0.461
Apau_0117
COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component; InterPro IPR000522; KEGG: mac:MA0951 hemin permease; PFAM: transport system permease protein; SPTR: Q8TS54 Hemin permease; PFAM: FecCD transport family; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
       0.461
Apau_0118
Periplasmic binding protein; COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; InterPro IPR002491; KEGG: dde:Dde_1622 iron transport periplasmic binding protein; PFAM: periplasmic binding protein; SPTR: C1TQH5 ABC-type Fe3+-hydroxamate transport system, periplasmic component; PFAM: Periplasmic binding protein.
       0.461
Your Current Organism:
Aminomonas paucivorans
NCBI taxonomy Id: 584708
Other names: A. paucivorans DSM 12260, Aminomonas paucivorans DSM 12260, Aminomonas paucivorans str. DSM 12260, Aminomonas paucivorans strain DSM 12260
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