STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apau_0170Rubrerythrin; COGs: COG1592 Rubrerythrin; InterProIPR003251:IPR009078:IPR004039:IPR009040:IPR 012347; KEGG: tai:Taci_0102 rubrerythrin; PFAM: Rubrerythrin; SPTR: D1B7T9 Rubrerythrin; PFAM: Rubrerythrin. (165 aa)    
Predicted Functional Partners:
Apau_0248
NAD(P)-dependent iron-only hydrogenase catalytic subunit; COGs: COG4624 Iron only hydrogenase large subunit C-terminal domain; InterProIPR013352:IPR001041:IPR019574:IPR001450:IPR 004108:IPR003149:IPR017900:IPR009016:IPR017896; KEGG: tai:Taci_0150 hydrogenase, Fe-only; PFAM: hydrogenase large subunit domain protein; NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; iron hydrogenase small subunit; SPTR: D1B7Y7 Hydrogenase, Fe-only; TIGRFAM: hydrogenase, Fe-only; PFAM: Iron only hydrogenase large subunit, C-t [...]
   
 0.928
Apau_0483
Flavin reductase domain protein FMN-binding; COGs: COG1853 Conserved protein/domain typically associated with flavoprotein oxygenase DIM6/NTAB family; InterPro IPR012349:IPR009002:IPR002563; KEGG: tai:Taci_1579 flavin reductase domain protein FMN-binding protein; PFAM: flavin reductase domain protein FMN-binding; SPTR: D1B709 Flavin reductase domain protein FMN-binding protein; PFAM: Flavin reductase like domain.
    
 0.923
hcp
Hybrid cluster protein; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.
     
 0.516
Apau_0400
Flavodoxin/nitric oxide synthase; COGs: COG0426 flavoprotein; InterPro IPR008254:IPR016440; KEGG: tai:Taci_0286 beta-lactamase domain protein; PFAM: flavodoxin/nitric oxide synthase; SPTR: D1B8C0 Beta-lactamase domain protein; PFAM: Metallo-beta-lactamase superfamily; Flavodoxin.
 
  
 0.507
Apau_1582
Rubredoxin-type Fe(Cys)4 protein; COGs: COG1773 Rubredoxin; InterPro IPR001052:IPR004039:IPR018527; KEGG: tai:Taci_1125 rubredoxin-type Fe(Cys)4 protein; PFAM: Rubredoxin-type Fe(Cys)4 protein; SPTR: D1B5R6 Rubredoxin-type Fe(Cys)4 protein; PFAM: Rubredoxin.
  
  
 0.500
Apau_0757
COGs: COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase alpha subunit; InterProIPR017896:IPR011895:IPR002869:IPR009014:IPR 002880:IPR019752:IPR019456:IPR001450:IPR011766:IPR017900:I PR015941; KEGG: tai:Taci_1436 pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate/ketoisovalerate oxidoreductase; Pyruvate-flavodoxin oxidoreductase, EKR domain; 4Fe-4S ferredoxin iron-sulfur binding domain protein; thiamine pyrophosphate protein domain protein TPP-binding; SPTR: D1B6M5 Pyruvate [...]
  
  
 0.495
Apau_0169
Polymorphic outer membrane protein; InterPro IPR003368:IPR011050; KEGG: gsu:GSU0754 fibronectin type III domain-containing protein; PFAM: Polymorphic membrane protein Chlamydia; SPTR: B5JIM9 Putative uncharacterized protein; TIGRFAM: polymorphic outer membrane protein; TIGRFAM: Chlamydial polymorphic outer membrane protein repeat.
       0.470
Apau_1392
InterPro IPR017900:IPR001450:IPR017896; KEGG: tai:Taci_0967 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: D1BA96 4Fe-4S ferredoxin iron-sulfur binding domain protein.
 
 
 0.463
Apau_0324
COGs: COG0334 Glutamate dehydrogenase/leucine dehydrogenase; InterProIPR006095:IPR016040:IPR014362:IPR006097:IPR 006096; KEGG: tai:Taci_0188 Glu/Leu/Phe/Val dehydrogenase; PFAM: Glu/Leu/Phe/Val dehydrogenase; Glu/Leu/Phe/Val dehydrogenase dimerisation region; SPTR: D1B825 Glu/Leu/Phe/Val dehydrogenase; PFAM: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; Glu/Leu/Phe/Val dehydrogenase, dimerisation domain; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
     
 0.451
Apau_0572
COGs: COG0334 Glutamate dehydrogenase/leucine dehydrogenase; InterProIPR006095:IPR016040:IPR014362:IPR006097:IPR 006096; KEGG: tai:Taci_0319 Glu/Leu/Phe/Val dehydrogenase; PFAM: Glu/Leu/Phe/Val dehydrogenase; Glu/Leu/Phe/Val dehydrogenase dimerisation region; SPTR: D1B8F3 Glu/Leu/Phe/Val dehydrogenase; PFAM: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; Glu/Leu/Phe/Val dehydrogenase, dimerisation domain; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
     
 0.451
Your Current Organism:
Aminomonas paucivorans
NCBI taxonomy Id: 584708
Other names: A. paucivorans DSM 12260, Aminomonas paucivorans DSM 12260, Aminomonas paucivorans str. DSM 12260, Aminomonas paucivorans strain DSM 12260
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