STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apau_0180Protein of unknown function DUF81; COGs: COG0730 permease; InterPro IPR002781; KEGG: taf:THA_20 hypothetical protein; PFAM: protein of unknown function DUF81; SPTR: C1TLT1 Predicted permease; PFAM: Sulfite exporter TauE/SafE. (256 aa)    
Predicted Functional Partners:
Apau_1129
Protease Do; COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain; InterProIPR011782:IPR001254:IPR001478:IPR009003:IPR 001940; KEGG: tai:Taci_0715 protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; PRIAM: HtrA2 peptidase; SMART: PDZ/DHR/GLGF domain protein; SPTR: D1B9J5 Protease Do; TIGRFAM: protease Do; PFAM: Trypsin; PDZ domain (Also known as DHR or GLGF); TIGRFAM: periplasmic serine protease, Do/DeqQ family.
    
 
 0.681
Apau_0181
Hypothetical protein; InterPro IPR012336; KEGG: rpr:RP397 thiol:disulfide interchange protein TlpA (TlpA); SPTR: D1C832 Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen.
       0.599
Apau_0821
PDZ/DHR/GLGF domain protein; InterPro IPR001478; KEGG: gyc:GYMC61_1216 peptidase S1 and S6 chymotrypsin/Hap; PFAM: PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; SPTR: B1G2A4 Protease Do; PFAM: PDZ domain (Also known as DHR or GLGF).
    
 
 0.577
Apau_0179
Transcriptional regulator, AsnC family; COGs: COG1522 Transcriptional regulators; InterProIPR013199:IPR019887:IPR019885:IPR011008:IPR 019888:IPR000485:IPR011991; KEGG: tai:Taci_0104 transcriptional regulator, AsnC family; PFAM: Transcription regulator, AsnC-type-like; Helix-turn-helix Mga DNA-binding trans-acting positive regulator; SMART: Transcription regulator, AsnC-type; SPTR: D1B7U1 Transcriptional regulator, AsnC family; PFAM: M protein trans-acting positive regulator (MGA) HTH domain; AsnC family.
       0.570
pheT
COGs: COG0072 Phenylalanyl-tRNA synthetase beta subunit; InterProIPR004532:IPR002547:IPR005146:IPR005147:IPR 005121:IPR020825:IPR016027:IPR009061:IPR012340; KEGG: tai:Taci_0730 phenylalanyl-tRNA synthetase, beta subunit; PFAM: B3/4 domain protein; t-RNA-binding domain protein; tRNA synthetase B5; ferredoxin-fold anticodon-binding; PRIAM: Phenylalanine--tRNA ligase; SPTR: D1B9L0 Phenylalanyl-tRNA synthetase, beta subunit; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; PFAM: tRNA synthetase B5 domain; B3/4 domain; Ferredoxin-fold anticodon binding domain; Putative tRNA binding doma [...]
     
 0.476
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
  
  
 0.412
Apau_0182
KEGG: hypothetical protein; SPTR: B9IJ59 Predicted protein (Fragment).
       0.400
Your Current Organism:
Aminomonas paucivorans
NCBI taxonomy Id: 584708
Other names: A. paucivorans DSM 12260, Aminomonas paucivorans DSM 12260, Aminomonas paucivorans str. DSM 12260, Aminomonas paucivorans strain DSM 12260
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.