STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apau_0389Proton-coupled thiamine transporter YuaJ; COGs: COG3859 membrane protein; InterPro IPR012651; KEGG: tai:Taci_0275 proton-coupled thiamine transporter YuaJ; PFAM: thiamine transporter YuaJ; SPTR: D1B8A9 Proton-coupled thiamine transporter YuaJ; TIGRFAM: proton-coupled thiamine transporter YuaJ; PFAM: Thiamine transporter protein (Thia_YuaJ); TIGRFAM: probable proton-coupled thiamine transporter YuaJ. (177 aa)    
Predicted Functional Partners:
Apau_0771
Putative helix-turn-helix protein YlxM/p13 family protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein.
  
     0.568
Apau_0388
FecR protein; InterPro IPR006860; KEGG: maq:Maqu_2531 peptidoglycan-binding LysM; PFAM: FecR protein; SPTR: A1U3N7 Peptidoglycan-binding LysM; PFAM: FecR protein.
       0.506
Apau_1609
COGs: COG0619 ABC-type cobalt transport system permease component CbiQ and related transporter; InterPro IPR003339; KEGG: tai:Taci_1151 cobalt transport protein; PFAM: cobalt transport protein; SPTR: C1TLF0 ABC-type cobalt transport system, permease component CbiQ; PFAM: Cobalt transport protein.
  
  
 0.493
Apau_2054
COGs: COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase; InterPro IPR004399:IPR013749; KEGG: ttj:TTHA0680 phosphomethylpyrimidine kinase (ThiD); PFAM: Phosphomethylpyrimidine kinase type-1; SPTR: C1TP80 Hydroxymethylpyrimidine kinase; phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase.
  
  
 0.455
Apau_0353
Protein of unknown function DUF988; COGs: COG4708 membrane protein; InterPro IPR010387; KEGG: tai:Taci_0260 protein of unknown function DUF988; PFAM: protein of unknown function DUF988; SPTR: D1B894 Putative uncharacterized protein; PFAM: QueT transporter.
  
   
 0.437
Apau_0493
KEGG: tai:Taci_0452 hypothetical protein; SPTR: D1B8T5 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1393).
  
     0.430
Apau_0390
Metal dependent phosphohydrolase; COGs: COG2206 HD-GYP domain; InterProIPR003607:IPR010916:IPR006675:IPR007890:IPR 006674; KEGG: gbm:Gbem_3173 metal dependent phosphohydrolase; PFAM: CHASE2 domain protein; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; SPTR: C1TNH6 HD-GYP domain-containing protein; TIGRFAM: metal dependent phophohydrolase; PFAM: HD domain; CHASE2 domain; TIGRFAM: uncharacterized domain HDIG.
       0.416
Your Current Organism:
Aminomonas paucivorans
NCBI taxonomy Id: 584708
Other names: A. paucivorans DSM 12260, Aminomonas paucivorans DSM 12260, Aminomonas paucivorans str. DSM 12260, Aminomonas paucivorans strain DSM 12260
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