STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Cooccurrence
Coexpression
Experiments
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[Homology]
Score
Apau_0390Metal dependent phosphohydrolase; COGs: COG2206 HD-GYP domain; InterProIPR003607:IPR010916:IPR006675:IPR007890:IPR 006674; KEGG: gbm:Gbem_3173 metal dependent phosphohydrolase; PFAM: CHASE2 domain protein; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; SPTR: C1TNH6 HD-GYP domain-containing protein; TIGRFAM: metal dependent phophohydrolase; PFAM: HD domain; CHASE2 domain; TIGRFAM: uncharacterized domain HDIG. (720 aa)    
Predicted Functional Partners:
Apau_0391
Diguanylate cyclase with PAS/PAC sensor; COGs: COG2199 FOG: GGDEF domain; InterProIPR000014:IPR000700:IPR000160:IPR001610:IPR 013767:IPR013656; KEGG: gem:GM21_2096 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein; SPTR: C6E953 Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S); TIGRFAM: diguanylate c [...]
 
 0.751
Apau_2241
Diguanylate cyclase with GAF sensor; COGs: COG2199 FOG: GGDEF domain; InterPro IPR000160:IPR003018; KEGG: tai:Taci_0098 diguanylate cyclase with GAF sensor; PFAM: GGDEF domain containing protein; GAF domain protein; SMART: GGDEF domain containing protein; GAF domain protein; SPTR: D1B7T5 Diguanylate cyclase with GAF sensor; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain; GAF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
 
 
 0.727
Apau_1946
Diguanylate cyclase with GAF sensor; COGs: COG2199 FOG: GGDEF domain; InterPro IPR000160:IPR003018; KEGG: tai:Taci_1538 diguanylate cyclase with GAF sensor; PFAM: GGDEF domain containing protein; GAF domain protein; SMART: GGDEF domain containing protein; GAF domain protein; SPTR: D1B6W8 Diguanylate cyclase with GAF sensor; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain; GAF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
 
 
 0.706
Apau_2115
Diguanylate cyclase with extracellular sensor; COGs: COG2199 FOG: GGDEF domain; InterPro IPR000160:IPR001638; KEGG: dma:DMR_16590 GGDEF domain protein; PFAM: GGDEF domain containing protein; extracellular solute-binding protein family 3; SMART: GGDEF domain containing protein; extracellular solute-binding protein family 3; SPTR: C4XPG9 GGDEF domain protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain; Bacterial extracellular solute-binding proteins, family 3; TIGRFAM: diguanylate cyclase (GGDEF) domain.
 
  
 0.692
Apau_0444
Diguanylate cyclase with PAS/PAC sensor; COGs: COG2199 FOG: GGDEF domain; InterPro IPR000014:IPR000160:IPR013656; KEGG: aeh:Mlg_2511 diguanylate cyclase with PAS/PAC sensor; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; SMART: GGDEF domain containing protein; PAS domain containing protein; SPTR: Q0EXC8 Signal transduction protein containing a membrane domain an EAL and a GGDEF domain-like; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain.
 
 0.680
Apau_2431
Diguanylate cyclase with PAS/PAC sensor; COGs: COG2199 FOG: GGDEF domain; InterPro IPR000160:IPR000014:IPR013656; KEGG: tai:Taci_1763 diguanylate cyclase with PAS/PAC sensor; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; SMART: GGDEF domain containing protein; PAS domain containing protein; SPTR: D1B7I6 Diguanylate cyclase with PAS/PAC sensor; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain.
 
 0.631
Apau_0456
Diguanylate cyclase with PAS/PAC sensor; COGs: COG2199 FOG: GGDEF domain; InterPro IPR000014:IPR000700:IPR000160:IPR013656; KEGG: tai:Taci_1587 diguanylate cyclase with PAS/PAC sensor; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; SMART: GGDEF domain containing protein; PAS domain containing protein; SPTR: D1B717 Diguanylate cyclase with PAS/PAC sensor; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain.
 
 0.620
Apau_0299
Diguanylate cyclase with PAS/PAC sensor; COGs: COG2199 FOG: GGDEF domain; InterProIPR000014:IPR000160:IPR013655:IPR001610:IPR 000700; KEGG: met:M446_3902 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; SMART: GGDEF domain containing protein; PAC repeat-containing protein; PAS domain containing protein; SPTR: B0UG16 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF [...]
 
 0.580
Apau_2040
Diguanylate cyclase and metal dependent phosphohydrolase; COGs: COG2206 HD-GYP domain; InterProIPR000014:IPR000160:IPR000700:IPR013656:IPR 006674; KEGG: tai:Taci_1694 diguanylate cyclase and metal dependent phosphohydrolase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; metal-dependent phosphohydrolase HD sub domain; SMART: GGDEF domain containing protein; PAS domain containing protein; SPTR: D1B7B7 Diguanylate cyclase and metal dependent phosphohydrolase; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: HD domain; GGDEF domain; PAS fold; TIGRFAM: PAS domain [...]
 
0.550
Apau_1859
Metal dependent phosphohydrolase; COGs: COG2206 HD-GYP domain; InterPro IPR006675:IPR003607:IPR003018:IPR006674; KEGG: dau:Daud_0679 metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; GAF domain protein; SMART: metal-dependent phosphohydrolase HD region; SPTR: B1I2I2 Metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: HD domain; TIGRFAM: uncharacterized domain HDIG.
 
 
0.527
Your Current Organism:
Aminomonas paucivorans
NCBI taxonomy Id: 584708
Other names: A. paucivorans DSM 12260, Aminomonas paucivorans DSM 12260, Aminomonas paucivorans str. DSM 12260, Aminomonas paucivorans strain DSM 12260
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