STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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[Homology]
Score
Apau_0396COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: tai:Taci_0280 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: D1B8B4 Glycosyl transferase family 2; PFAM: Glycosyl transferase family 2. (318 aa)    
Predicted Functional Partners:
Apau_0394
NAD-dependent epimerase/dehydratase; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR016040:IPR001509; KEGG: tai:Taci_0278 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: D1B8B2 NAD-dependent epimerase/dehydratase; PFAM: NAD dependent epimerase/dehydratase family.
 0.993
Apau_0393
COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR011330:IPR002509; KEGG: tai:Taci_0277 polysaccharide deacetylase; PFAM: polysaccharide deacetylase; SPTR: D1B8B1 Polysaccharide deacetylase; PFAM: Polysaccharide deacetylase.
 
 
 0.986
Apau_0395
COGs: COG0223 Methionyl-tRNA formyltransferase; InterPro IPR002376:IPR005793:IPR011034; KEGG: tai:Taci_0279 formyl transferase domain protein; PFAM: formyl transferase domain protein; SPTR: D1B8B3 Formyl transferase domain protein; PFAM: Formyl transferase; Formyl transferase, C-terminal domain.
 
 0.977
Apau_0398
Glycosyl transferase family 39; COGs: COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family; InterPro IPR003342; KEGG: tai:Taci_0282 glycosyl transferase family 39; PFAM: glycosyl transferase family 39; SPTR: D1B8B6 Glycosyl transferase family 39; PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase.
 
 
 0.977
Apau_0397
Glutamine--scyllo-inositol transaminase; COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR015421:IPR015422:IPR015424:IPR000653; KEGG: tai:Taci_0281 glutamine--scyllo-inositol transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; PRIAM: Glutamine--scyllo-inositol transaminase; SPTR: D1B8B5 Glutamine--scyllo-inositol transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family; Belongs to the DegT/DnrJ/EryC1 family.
  
 0.884
Apau_0392
Nucleotide sugar dehydrogenase; COGs: COG1004 UDP-glucose 6-dehydrogenase; InterProIPR016040:IPR013328:IPR014027:IPR008927:IPR 017476:IPR001732:IPR014026; KEGG: tai:Taci_0276 nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; PRIAM: UDP-glucose 6-dehydrogenase; SPTR: D1B8B0 Nucleotide sugar dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase family, central d [...]
  
  
 0.666
Apau_2240
Mannose-6-phosphate isomerase, type 2; COGs: COG0836 Mannose-1-phosphate guanylyltransferase; InterProIPR011051:IPR014710:IPR006375:IPR005835:IPR 001538; KEGG: hmo:HM1_1237 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; PRIAM: Mannose-1-phosphate guanylyltransferase; SPTR: C1TKD3 Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: Nucleotidyl transferase; Mannose-6-phosphate isomerase; TIGR [...]
    
 0.524
Apau_1085
COGs: COG0223 Methionyl-tRNA formyltransferase; InterPro IPR002376:IPR001555; KEGG: dal:Dalk_0631 formyl transferase domain protein; PFAM: formyl transferase domain protein; SPTR: B8FJQ8 Formyl transferase domain protein; manually curated; PFAM: Formyl transferase.
 
 
 0.522
Apau_0399
COGs: COG0840 Methyl-accepting chemotaxis protein; InterPro IPR004089:IPR003660; KEGG: tai:Taci_0283 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; SPTR: D1B8B7 Methyl-accepting chemotaxis sensory transducer; PFAM: HAMP domain; Methyl-accepting chemotaxis protein (MCP) signaling domain.
       0.516
Apau_1811
Nucleotidyl transferase; COGs: COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon); InterPro IPR000644:IPR005835; KEGG: sru:SRU_0607 putative mannose-1-phosphate guanyltransferase; PFAM: Nucleotidyl transferase; CBS domain containing protein; SPTR: Q2S4Y1 Putative mannose-1-phosphate guanyltransferase; PFAM: CBS domain; Nucleotidyl transferase.
  
 0.513
Your Current Organism:
Aminomonas paucivorans
NCBI taxonomy Id: 584708
Other names: A. paucivorans DSM 12260, Aminomonas paucivorans DSM 12260, Aminomonas paucivorans str. DSM 12260, Aminomonas paucivorans strain DSM 12260
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