STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apau_0402YidE/YbjL duplication; COGs: COG2985 permease; InterPro IPR006512; KEGG: tai:Taci_0300 YidE/YbjL duplication; PFAM: YidE/YbjL duplication domain protein; SPTR: D1B8D4 YidE/YbjL duplication; TIGRFAM: YidE/YbjL duplication; PFAM: Predicted Permease Membrane Region; TIGRFAM: AspT/YidE/YbjL antiporter duplication domain. (385 aa)    
Predicted Functional Partners:
Apau_0401
KEGG: tai:Taci_0287 hypothetical protein; SPTR: D1B8C1 Putative uncharacterized protein.
       0.530
Apau_0403
COGs: COG1884 Methylmalonyl-CoA mutase N-terminal domain/subunit; InterPro IPR014348:IPR016176:IPR006098:IPR006099; KEGG: tai:Taci_0288 methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; PRIAM: Methylmalonyl-CoA mutase; SPTR: D1B8C2 Methylmalonyl-CoA mutase, large subunit; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: Methylmalonyl-CoA mutase; TIGRFAM: methylmalonyl-CoA mutase N-terminal domain.
       0.489
Apau_0400
Flavodoxin/nitric oxide synthase; COGs: COG0426 flavoprotein; InterPro IPR008254:IPR016440; KEGG: tai:Taci_0286 beta-lactamase domain protein; PFAM: flavodoxin/nitric oxide synthase; SPTR: D1B8C0 Beta-lactamase domain protein; PFAM: Metallo-beta-lactamase superfamily; Flavodoxin.
       0.456
Apau_0404
Cobalamin B12-binding domain protein; COGs: COG2185 Methylmalonyl-CoA mutase C-terminal domain/subunit (cobalamin-binding); InterPro IPR006158:IPR006159; KEGG: tai:Taci_0289 cobalamin B12-binding domain protein; PFAM: cobalamin B12-binding domain protein; SPTR: D1B8C3 Cobalamin B12-binding domain protein; PFAM: B12 binding domain; TIGRFAM: methylmalonyl-CoA mutase C-terminal domain.
       0.442
Apau_0405
methylmalonyl-CoA epimerase; InterPro IPR017515:IPR004360; KEGG: tai:Taci_0290 methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: D1B8C4 Methylmalonyl-CoA epimerase; TIGRFAM: methylmalonyl-CoA epimerase; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; TIGRFAM: methylmalonyl-CoA epimerase.
       0.424
Your Current Organism:
Aminomonas paucivorans
NCBI taxonomy Id: 584708
Other names: A. paucivorans DSM 12260, Aminomonas paucivorans DSM 12260, Aminomonas paucivorans str. DSM 12260, Aminomonas paucivorans strain DSM 12260
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