STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apau_0419KEGG: tai:Taci_0307 hypothetical protein; SPTR: D1B8E1 Putative uncharacterized protein. (146 aa)    
Predicted Functional Partners:
Apau_0418
COGs: COG1560 Lauroyl/myristoyl acyltransferase; InterPro IPR000169:IPR004960; KEGG: tai:Taci_0306 lipid A biosynthesis acyltransferase; PFAM: lipid A biosynthesis acyltransferase; SPTR: D1B8E0 Lipid A biosynthesis acyltransferase; PFAM: Bacterial lipid A biosynthesis acyltransferase.
 
     0.866
Apau_1062
COGs: COG4372 Uncharacterized protein with the myosin-like domain; KEGG: tai:Taci_0658 uncharacterized protein with myosin-like protein domain; SPTR: D1B9E1 Uncharacterized protein with myosin-like protein domain; PFAM: Protein of unknown function (DUF3084).
 
     0.789
Apau_0895
Permease YjgP/YjgQ family protein; COGs: COG0795 permease; InterPro IPR005495; KEGG: tai:Taci_1288 permease YjgP/YjgQ family protein; PFAM: permease YjgP/YjgQ family protein; SPTR: D1B678 Permease YjgP/YjgQ family protein; PFAM: Predicted permease YjgP/YjgQ family.
 
     0.777
Apau_0915
S-layer domain protein; InterPro IPR001119; KEGG: tai:Taci_1274 S-layer domain protein; PFAM: S-layer domain protein; SPTR: D1B664 S-layer domain protein; PFAM: S-layer homology domain.
 
     0.773
Apau_0948
KEGG: tai:Taci_1249 hypothetical protein; SPTR: D1B639 Putative uncharacterized protein.
  
     0.771
Apau_0888
Surface antigen (D15); COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR010827:IPR000184; KEGG: tai:Taci_1295 surface antigen (D15); PFAM: surface antigen (D15); surface antigen variable number repeat protein; SPTR: D1B685 Surface antigen (D15); manually curated; PFAM: Surface antigen variable number repeat; Surface antigen.
  
     0.766
Apau_1251
KEGG: tai:Taci_0814 hypothetical protein; SPTR: D1B9U4 Putative uncharacterized protein; PFAM: SpoIVB peptidase S55.
  
     0.719
Apau_1467
COGs: COG1316 Transcriptional regulator; InterPro IPR004474; KEGG: tai:Taci_0893 cell envelope-related transcriptional attenuator; PFAM: cell envelope-related transcriptional attenuator; SPTR: D1BA23 Cell envelope-related transcriptional attenuator; TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: Cell envelope-related transcriptional attenuator domain; TIGRFAM: cell envelope-related function transcriptional attenuator common domain.
  
     0.644
Apau_0808
KEGG: tai:Taci_0483 hypothetical protein; SPTR: D1B8W6 Putative uncharacterized protein.
  
     0.636
Apau_0798
COGs: COG4632 Exopolysaccharide biosynthesis protein related to N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase; InterPro IPR001119; KEGG: tai:Taci_1397 N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase-like exopolysaccharide biosynthesis protein; SPTR: D1B6I7 N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase-like exopolysaccharide biosynthesis protein; PFAM: Predicted periplasmic protein (DUF2233).
  
     0.635
Your Current Organism:
Aminomonas paucivorans
NCBI taxonomy Id: 584708
Other names: A. paucivorans DSM 12260, Aminomonas paucivorans DSM 12260, Aminomonas paucivorans str. DSM 12260, Aminomonas paucivorans strain DSM 12260
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.