STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apau_0446COGs: COG0289 Dihydrodipicolinate reductase; InterPro IPR016040:IPR000846; KEGG: tai:Taci_1593 dihydrodipicolinate reductase; PFAM: dihydrodipicolinate reductase; SPTR: D1B723 Dihydrodipicolinate reductase; PFAM: Dihydrodipicolinate reductase, N-terminus; Dihydrodipicolinate reductase, C-terminus; TIGRFAM: dihydrodipicolinate reductase; Belongs to the DapB family. (264 aa)    
Predicted Functional Partners:
Apau_0921
COGs: COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; InterPro IPR002220:IPR013785:IPR020625; KEGG: sti:Sthe_0488 dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; SPTR: D1C7U3 Dihydrodipicolinate synthase; PFAM: Dihydrodipicolinate synthetase family; TIGRFAM: dihydrodipicolinate synthase; Belongs to the DapA family.
 
 
 0.888
Apau_1717
COGs: COG0527 Aspartokinase; InterPro IPR001048:IPR002912:IPR001341:IPR018042; KEGG: tai:Taci_1239 aspartate kinase; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein; PRIAM: Aspartate kinase; SPTR: D1B629 Aspartate kinase; TIGRFAM: aspartate kinase; PFAM: Amino acid kinase family; ACT domain; TIGRFAM: aspartate kinase; Belongs to the aspartokinase family.
 
 
 0.842
Apau_1171
CBS domain containing protein; COGs: COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; InterPro IPR001667:IPR000644:IPR002646:IPR013785; KEGG: tai:Taci_0750 CBS domain containing protein; PFAM: CBS domain containing protein; phosphoesterase RecJ domain protein; Polynucleotide adenylyltransferase region; SMART: CBS domain containing protein; SPTR: D1B9N0 CBS domain containing protein; manually curated; PFAM: DHH family; CBS domain; Poly A polymerase head domain; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
  
    0.820
asd
Aspartate semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.
 
  
 0.796
Apau_2118
Polynucleotide adenylyltransferase region; COGs: COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; InterPro IPR002646; KEGG: sth:STH1054 putative RNA nucleotidyltransferase; PFAM: Polynucleotide adenylyltransferase region; SPTR: Q67QK4 Putative RNA nucleotidyltransferase; PFAM: Poly A polymerase head domain; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
  
    0.795
birA
biotin/acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
 
  
 0.793
Apau_0449
COGs: COG0460 Homoserine dehydrogenase; InterPro IPR019811:IPR016040:IPR005106:IPR001342; KEGG: acp:A2cp1_4072 homoserine dehydrogenase; PFAM: homoserine dehydrogenase; homoserine dehydrogenase NAD-binding; PRIAM: Homoserine dehydrogenase; SPTR: B8J9K2 Homoserine dehydrogenase; PFAM: Homoserine dehydrogenase; Homoserine dehydrogenase, NAD binding domain.
 
  
 0.725
Apau_0448
Aminotransferase class I and II; COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR015421:IPR004838:IPR015424:IPR004839; KEGG: mlo:mlr4213 aspartate aminotransferase; PFAM: aminotransferase class I and II; SPTR: C8SSR9 Aminotransferase class I and II; PFAM: Aminotransferase class I and II.
    
 0.704
Apau_0969
COGs: COG0019 Diaminopimelate decarboxylase; InterPro IPR000183:IPR009006:IPR002433; KEGG: tai:Taci_0576 Orn/DAP/Arg decarboxylase 2; PFAM: Orn/DAP/Arg decarboxylase 2; SPTR: D1B959 Orn/DAP/Arg decarboxylase 2; PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
 
 
 0.677
Apau_0445
Beta-lactamase domain-containing protein; COGs: COG1237 Metal-dependent hydrolase of the beta-lactamase superfamily II; KEGG: ppd:Ppro_1945 beta-lactamase domain-containing protein; SPTR: C1TM01 Metal-dependent hydrolase, beta-lactamase superfamily II; PFAM: Metallo-beta-lactamase superfamily.
       0.648
Your Current Organism:
Aminomonas paucivorans
NCBI taxonomy Id: 584708
Other names: A. paucivorans DSM 12260, Aminomonas paucivorans DSM 12260, Aminomonas paucivorans str. DSM 12260, Aminomonas paucivorans strain DSM 12260
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.