STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apau_0462KEGG: tth:TTC0516 hypothetical protein; SPTR: Q72KD0 Hypothetical membrane spanning protein. (451 aa)    
Predicted Functional Partners:
Apau_0461
Conserved hypothetical protein; COGs: COG1541 Coenzyme F390 synthetase; KEGG: scl:sce1793 hypothetical protein; SPTR: A9FJE8 Putative uncharacterized protein.
       0.727
Apau_0459
Protein of unknown function DUF955; COGs: COG2856 Zn peptidase; InterPro IPR010359; KEGG: tai:Taci_1586 protein of unknown function DUF955; PFAM: protein of unknown function DUF955; SPTR: D1B716 Putative uncharacterized protein; PFAM: Domain of unknown function (DUF955).
       0.500
Apau_0460
Transcriptional regulator, XRE family; InterPro IPR001387:IPR010982; KEGG: tai:Taci_1585 transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: D1B715 Transcriptional regulator, XRE family; PFAM: Helix-turn-helix.
       0.500
Apau_0463
Protein of unknown function DUF1659; InterPro IPR012454; KEGG: tai:Taci_1584 hypothetical protein; PFAM: protein of unknown function DUF1659; SPTR: C1TNS2 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1659).
       0.434
Apau_0464
KEGG: tai:Taci_1583 hypothetical protein; SPTR: D1B713 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2922).
       0.400
Your Current Organism:
Aminomonas paucivorans
NCBI taxonomy Id: 584708
Other names: A. paucivorans DSM 12260, Aminomonas paucivorans DSM 12260, Aminomonas paucivorans str. DSM 12260, Aminomonas paucivorans strain DSM 12260
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.