STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apau_0491Aminotransferase class-III; COGs: COG4992 Ornithine/acetylornithine aminotransferase; InterPro IPR015421:IPR005814:IPR015424; KEGG: tai:Taci_0450 aminotransferase class-III; PFAM: aminotransferase class-III; SPTR: D1B8T3 Aminotransferase class-III; PFAM: Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (373 aa)    
Predicted Functional Partners:
argC
N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.
 
 
 0.997
Apau_0490
COGs: COG0548 Acetylglutamate kinase; InterPro IPR001057:IPR001048:IPR011148; KEGG: tai:Taci_0449 aspartate/glutamate/uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase; PRIAM: Acetylglutamate kinase; SPTR: D1B8T2 Aspartate/glutamate/uridylate kinase; PFAM: Amino acid kinase family; TIGRFAM: acetylglutamate kinase.
 
 
 0.992
Apau_0492
COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR001261:IPR010175:IPR002933; KEGG: tai:Taci_0451 N-acetyl-ornithine/N-acetyl-lysine deacetylase; PFAM: peptidase M20; SPTR: D1B8T4 N-acetyl-ornithine/N-acetyl-lysine deacetylase; TIGRFAM: N-acetyl-ornithine/N-acetyl-lysine deacetylase; PFAM: Peptidase family M20/M25/M40; TIGRFAM: N-acetyl-ornithine/N-acetyl-lysine deacetylase.
 
 0.983
Apau_1423
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.
 
 0.915
argH
COGs: COG0165 Argininosuccinate lyase; InterProIPR009049:IPR003031:IPR000362:IPR008948:IPR 020557; KEGG: tai:Taci_1299 argininosuccinate lyase; PFAM: fumarate lyase; PRIAM: Argininosuccinate lyase; SPTR: D1B689 Argininosuccinate lyase; TIGRFAM: argininosuccinate lyase; PFAM: Lyase; TIGRFAM: argininosuccinate lyase.
 
  
 0.908
argG
COGs: COG0137 Argininosuccinate synthase; InterPro IPR001518:IPR014729:IPR018223; KEGG: tai:Taci_0753 argininosuccinate synthase; PFAM: argininosuccinate synthase; PRIAM: Argininosuccinate synthase; SPTR: D1B9N3 Argininosuccinate synthase; TIGRFAM: argininosuccinate synthase; PFAM: Arginosuccinate synthase; TIGRFAM: argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
 
 
 0.904
Apau_0488
COGs: COG0372 Citrate synthase; InterPro IPR016142:IPR016141:IPR002020; KEGG: tai:Taci_0447 citrate synthase-like protein; PFAM: Citrate synthase; SPTR: D1B8T0 Citrate synthase-like protein; PFAM: Citrate synthase.
  
 0.864
Apau_1999
COGs: COG0078 Ornithine carbamoyltransferase; InterPro IPR006130:IPR002082:IPR006132:IPR006131; KEGG: tai:Taci_0425 aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain protein; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; SPTR: D1B8Q9 Aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain protein; PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; TIGRFAM: ornithine carbamoy [...]
 
 
 0.831
bioB
Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
 
 
 
 0.801
Apau_0487
KEGG: tai:Taci_0446 hypothetical protein; SPTR: D1B8S9 Putative uncharacterized protein.
       0.737
Your Current Organism:
Aminomonas paucivorans
NCBI taxonomy Id: 584708
Other names: A. paucivorans DSM 12260, Aminomonas paucivorans DSM 12260, Aminomonas paucivorans str. DSM 12260, Aminomonas paucivorans strain DSM 12260
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