STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apau_0601Transcriptional regulator, GntR family; COGs: COG1802 Transcriptional regulators; InterPro IPR000524:IPR011991:IPR011711; KEGG: tai:Taci_1669 transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: D1B792 Transcriptional regulator, GntR family; PFAM: Bacterial regulatory proteins, gntR family; FCD domain. (228 aa)    
Predicted Functional Partners:
Apau_0752
Transcriptional regulator, GntR family; COGs: COG1802 Transcriptional regulators; InterPro IPR000524:IPR011711:IPR011991; KEGG: tai:Taci_1439 transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; SMART: regulatory protein GntR HTH; SPTR: D1B6M8 Transcriptional regulator, GntR family; PFAM: Bacterial regulatory proteins, gntR family; FCD domain.
  
     0.774
Apau_0602
DegT/DnrJ/EryC1/StrS aminotransferase; COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR015421:IPR015422:IPR015424:IPR000653; KEGG: tai:Taci_1668 DegT/DnrJ/EryC1/StrS aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; SPTR: D1B791 DegT/DnrJ/EryC1/StrS aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family; Belongs to the DegT/DnrJ/EryC1 family.
       0.529
Apau_0599
Hypothetical protein; KEGG: eca:ECA2103 harpin; SPTR: C9M5B4 Putative protoheme IX farnesyltransferase.
       0.518
Apau_0600
Putative transcriptional regulator, GntR family; COGs: COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs; InterPro IPR015421:IPR015422:IPR015424:IPR004839; KEGG: tai:Taci_1670 putative transcriptional regulator, GntR family; PFAM: aminotransferase class I and II; SPTR: D1B793 Putative transcriptional regulator, GntR family; PFAM: Aminotransferase class I and II.
       0.518
Apau_0760
GntR domain protein; COGs: COG2186 Transcriptional regulators; InterPro IPR013668:IPR001266:IPR011711; KEGG: tai:Taci_1430 GntR domain protein; PFAM: GntR domain protein; Ribonuclease R winged-helix domain protein; Ribosomal protein S19e; SPTR: D1B6L9 GntR domain protein; PFAM: Ribonuclease R winged-helix domain; FCD domain.
  
  
 0.463
Your Current Organism:
Aminomonas paucivorans
NCBI taxonomy Id: 584708
Other names: A. paucivorans DSM 12260, Aminomonas paucivorans DSM 12260, Aminomonas paucivorans str. DSM 12260, Aminomonas paucivorans strain DSM 12260
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.