STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apau_0660Cupin 2 conserved barrel domain protein; InterPro IPR011051:IPR013096:IPR010462:IPR014710; KEGG: tai:Taci_1646 cupin 2 conserved barrel domain protein; PFAM: Cupin 2 conserved barrel domain protein; SPTR: D1B769 Cupin 2 conserved barrel domain protein; PFAM: Cupin domain. (116 aa)    
Predicted Functional Partners:
Apau_0661
KEGG: tai:Taci_1645 hypothetical protein; SPTR: D1B768 Putative uncharacterized protein.
       0.773
Apau_0857
MotA/TolQ/ExbB proton channel; COGs: COG1291 Flagellar motor component; InterPro IPR002898; KEGG: tai:Taci_1326 MotA/TolQ/ExbB proton channel; PFAM: MotA/TolQ/ExbB proton channel; SPTR: D1B6B6 MotA/TolQ/ExbB proton channel; PFAM: MotA/TolQ/ExbB proton channel family.
    
   0.578
Apau_1755
COGs: COG0077 Prephenate dehydratase; InterProIPR008242:IPR002701:IPR001086:IPR020822:IPR 002912; KEGG: tai:Taci_1644 prephenate dehydratase; PFAM: prephenate dehydratase; Chorismate mutase, type II; amino acid-binding ACT domain protein; PRIAM: Prephenate dehydratase; SPTR: C1TR93 Prephenate dehydratase; PFAM: Prephenate dehydratase; Chorismate mutase type II; ACT domain.
  
 
 0.559
Apau_0662
NAD(P)H dehydrogenase (quinone); COGs: COG2249 Putative NADPH-quinone reductase (modulator of drug activity B); InterPro IPR003680; KEGG: saf:SULAZ_1557 NAD; PFAM: NAD(P)H dehydrogenase (quinone); SPTR: C1DWN5 NAD; PFAM: Flavodoxin-like fold.
       0.548
Apau_0861
COGs: COG1886 Flagellar motor switch/type III secretory pathway protein; InterPro IPR012826:IPR001172:IPR001543; KEGG: tai:Taci_1322 flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; SPTR: D1B6B2 Flagellar motor switch protein FliN; TIGRFAM: flagellar motor switch protein FliN; PFAM: Surface presentation of antigens (SPOA); TIGRFAM: type III secretion system apparatus protein YscQ/HrcQ; flagellar motor switch protein FliN.
    
   0.511
Apau_0874
COGs: COG1776 Chemotaxis protein CheC inhibitor of MCP methylation; InterPro IPR007597; KEGG: tai:Taci_1309 CheC, inhibitor of MCP methylation; PFAM: CheC domain protein; SPTR: D1B699 CheC, inhibitor of MCP methylation; PFAM: CheC-like family.
    
   0.511
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
    
  0.509
sigA
RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.487
Apau_0134
Transcriptional regulator, GntR family; COGs: COG2188 Transcriptional regulators; InterPro IPR000524:IPR011663:IPR011991; KEGG: svi:Svir_34690 transcriptional regulator, GntR family; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: Q3Y033 Regulatory protein, GntR:Bacterial regulatory protein, GntR; PFAM: Bacterial regulatory proteins, gntR family; UTRA domain.
  
    0.485
Apau_0135
Transcriptional regulator, GntR family; COGs: COG2188 Transcriptional regulators; InterPro IPR000524:IPR011663:IPR011991; KEGG: ttr:Tter_2575 phophonate C-P lyase system transcriptional regulator PhnF, GntR family; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: C4G2Z5 Putative uncharacterized protein; PFAM: Bacterial regulatory proteins, gntR family; UTRA domain.
  
    0.485
Your Current Organism:
Aminomonas paucivorans
NCBI taxonomy Id: 584708
Other names: A. paucivorans DSM 12260, Aminomonas paucivorans DSM 12260, Aminomonas paucivorans str. DSM 12260, Aminomonas paucivorans strain DSM 12260
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.