STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apau_0738KEGG: dau:Daud_0832 hypothetical protein; SPTR: B1I2Y6 Putative uncharacterized protein. (114 aa)    
Predicted Functional Partners:
Apau_0736
Cyclase family protein; COGs: COG1878 metal-dependent hydrolase; InterPro IPR007325; KEGG: csc:Csac_0804 cyclase family protein; PFAM: cyclase family protein; SPTR: A4XHN8 Cyclase family protein; PFAM: Putative cyclase.
       0.776
Apau_0737
YbaK/prolyl-tRNA synthetase associated region; COGs: COG2606 conserved hypothetical protein; InterPro IPR007214; KEGG: cbb:CLD_1704 EbsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; SPTR: C6QNH7 YbaK/prolyl-tRNA synthetase associated region; PFAM: YbaK / prolyl-tRNA synthetases associated domain.
       0.773
Apau_0735
KEGG: pmy:Pmen_0510 hypothetical protein; SPTR: A4XPL4 Putative uncharacterized protein.
       0.548
Apau_0809
Polysaccharide pyruvyl transferase CsaB; COGs: COG2327 conserved hypothetical protein; InterPro IPR019896:IPR007345; KEGG: tai:Taci_0484 polysaccharide pyruvyl transferase; PFAM: polysaccharide pyruvyl transferase; SPTR: D1B8W7 Polysaccharide pyruvyl transferase; TIGRFAM: polysaccharide pyruvyl transferase CsaB; PFAM: Polysaccharide pyruvyl transferase; TIGRFAM: polysaccharide pyruvyl transferase CsaB.
  
     0.413
Your Current Organism:
Aminomonas paucivorans
NCBI taxonomy Id: 584708
Other names: A. paucivorans DSM 12260, Aminomonas paucivorans DSM 12260, Aminomonas paucivorans str. DSM 12260, Aminomonas paucivorans strain DSM 12260
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.