STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apau_0789Transcriptional repressor, CtsR; COGs: COG4463 Transcriptional repressor of class III stress genes; InterPro IPR008463; KEGG: tai:Taci_1405 transcriptional repressor, CtsR; PFAM: Firmicute transcriptional repressor of class III stress genes; SPTR: D1B6J5 Transcriptional repressor, CtsR; PFAM: Firmicute transcriptional repressor of class III stress genes (CtsR). (159 aa)    
Predicted Functional Partners:
Apau_0790
UvrB/UvrC protein; COGs: COG3880 Uncharacterized protein with conserved CXXC pairs; InterPro IPR001943; KEGG: tai:Taci_1404 UvrB/UvrC protein; PFAM: UvrB/UvrC protein; SPTR: D1B6J4 UvrB/UvrC protein; PFAM: UvrB/uvrC motif.
 
  
 0.986
Apau_0791
ATP:guanido phosphotransferase; COGs: COG3869 Arginine kinase; InterPro IPR000749:IPR014746; KEGG: tai:Taci_1403 ATP:guanido phosphotransferase; PFAM: ATP:guanido phosphotransferase; SPTR: D1B6J3 ATP:guanido phosphotransferase; PFAM: ATP:guanido phosphotransferase, C-terminal catalytic domain.
 
  
 0.973
Apau_0792
ATPase AAA-2 domain protein; COGs: COG0542 ATPase with chaperone activity ATP-binding subunit; InterProIPR001943:IPR001270:IPR003593:IPR004176:IPR 003959:IPR013093:IPR019489:IPR018368; KEGG: tai:Taci_1402 ATPase AAA-2 domain protein; PFAM: ATPase AAA-2 domain protein; Clp domain protein; AAA ATPase central domain protein; UvrB/UvrC protein; Clp ATPase-like; SMART: AAA ATPase; SPTR: D1B6J2 ATPase AAA-2 domain protein; PFAM: AAA domain (Cdc48 subfamily); Clp amino terminal domain; C-terminal, D2-small domain, of ClpB protein; ATPase family associated with various cellular activities (AAA [...]
  
  
 0.895
clpB
ATP-dependent chaperone ClpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family.
  
  
 0.773
Apau_1362
COGs: COG4956 Integral membrane protein (PIN domain superfamily); InterPro IPR002716:IPR002792:IPR006596; KEGG: tai:Taci_1002 PilT protein domain protein; PFAM: PilT protein domain protein; deoxyribonuclease/rho motif-related TRAM; SMART: Nucleotide binding protein PINc; SPTR: D1B5E3 PilT protein domain protein; PFAM: TRAM domain; PIN domain.
 
    0.653
Apau_1322
Protein of unknown function DUF322; COGs: COG1302 conserved hypothetical protein; InterPro IPR005531; KEGG: tai:Taci_1040 protein of unknown function DUF322; PFAM: protein of unknown function DUF322; SPTR: D1B5I1 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF322).
  
     0.627
Apau_0788
Major facilitator superfamily MFS_1; COGs: COG2814 Arabinose efflux permease; InterPro IPR001411:IPR016196:IPR011701; KEGG: emi:Emin_0882 major facilitator transporter; PFAM: major facilitator superfamily MFS_1; SPTR: B2KD41 Major facilitator superfamily MFS_1; manually curated; PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily.
       0.524
plsY
Protein of unknown function DUF205; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP.
       0.515
Apau_0771
Putative helix-turn-helix protein YlxM/p13 family protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein.
  
     0.512
Apau_0786
CoA-binding domain protein; COGs: COG1042 Acyl-CoA synthetase (NDP forming); InterProIPR011761:IPR016040:IPR016102:IPR003781:IPR 013650; KEGG: tai:Taci_1407 CoA-binding domain protein; PFAM: CoA-binding domain protein; ATP-grasp domain protein; SPTR: D1B6J7 CoA-binding domain protein.
       0.512
Your Current Organism:
Aminomonas paucivorans
NCBI taxonomy Id: 584708
Other names: A. paucivorans DSM 12260, Aminomonas paucivorans DSM 12260, Aminomonas paucivorans str. DSM 12260, Aminomonas paucivorans strain DSM 12260
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