STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apau_0876Fungal mating-type pheromone; InterPro IPR012597; KEGG: tai:Taci_1307 hypothetical protein; PFAM: Fungal mating-type pheromone; SPTR: D1B697 Putative uncharacterized protein. (375 aa)    
Predicted Functional Partners:
Apau_0877
RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
       0.783
Apau_0878
Protein of unknown function DUF342; COGs: COG1315 polymerase most protein contain PALM domain HD hydrolase domain and Zn-ribbon domain; InterPro IPR005646; KEGG: tai:Taci_1305 protein of unknown function DUF342; PFAM: protein of unknown function DUF342; SPTR: D1B695 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF342).
       0.739
Apau_0874
COGs: COG1776 Chemotaxis protein CheC inhibitor of MCP methylation; InterPro IPR007597; KEGG: tai:Taci_1309 CheC, inhibitor of MCP methylation; PFAM: CheC domain protein; SPTR: D1B699 CheC, inhibitor of MCP methylation; PFAM: CheC-like family.
       0.731
cheD
CheD, stimulates methylation of MCP proteins; Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis; Belongs to the CheD family.
       0.731
Apau_0879
KEGG: tai:Taci_1304 hypothetical protein; SPTR: D1B694 Putative uncharacterized protein.
       0.658
Apau_0880
KEGG: tai:Taci_1303 hypothetical protein; SPTR: D1B693 Putative uncharacterized protein.
       0.640
Apau_0881
KEGG: tai:Taci_1302 hypothetical protein; SPTR: D1B692 Putative uncharacterized protein.
       0.632
Apau_0873
CheA signal transduction histidine kinase; COGs: COG0643 Chemotaxis protein histidine kinase and related kinase; InterProIPR005467:IPR002545:IPR008207:IPR004358:IPR 003594:IPR009082:IPR010808:IPR004105; KEGG: tai:Taci_1310 CheA signal transduction histidine kinase; PFAM: Signal transducing histidine kinase homodimeric; P2 response regulator binding domain protein; Hpt domain protein; ATP-binding region ATPase domain protein; CheW domain protein; SMART: CheW domain protein; Hpt domain protein; ATP-binding region ATPase domain protein; SPTR: D1B6A0 CheA signal transduction histidine kina [...]
       0.604
Apau_0882
COGs: COG1098 RNA binding protein (contains ribosomal protein S1 domain); InterPro IPR003029:IPR016027:IPR012340; KEGG: tai:Taci_1301 RNA binding S1 domain protein; PFAM: RNA binding S1 domain protein; SPTR: D1B691 RNA binding S1 domain protein; PFAM: S1 RNA binding domain.
       0.540
Apau_0883
Protein of unknown function DUF501; COGs: COG1507 conserved hypothetical protein; InterPro IPR007511; KEGG: tai:Taci_1300 protein of unknown function DUF501; PFAM: protein of unknown function DUF501; SPTR: D1B690 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF501).
       0.538
Your Current Organism:
Aminomonas paucivorans
NCBI taxonomy Id: 584708
Other names: A. paucivorans DSM 12260, Aminomonas paucivorans DSM 12260, Aminomonas paucivorans str. DSM 12260, Aminomonas paucivorans strain DSM 12260
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.