STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apau_0942Protein of unknown function DUF1393; COGs: COG4720 membrane protein; InterPro IPR009825; KEGG: tai:Taci_1255 protein of unknown function DUF1393; PFAM: protein of unknown function DUF1393; SPTR: D1B645 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1393). (162 aa)    
Predicted Functional Partners:
Apau_1609
COGs: COG0619 ABC-type cobalt transport system permease component CbiQ and related transporter; InterPro IPR003339; KEGG: tai:Taci_1151 cobalt transport protein; PFAM: cobalt transport protein; SPTR: C1TLF0 ABC-type cobalt transport system, permease component CbiQ; PFAM: Cobalt transport protein.
 
 
 0.936
Apau_2099
Cobalt transport protein; InterPro IPR003339; KEGG: hma:rrnAC2280 cobalt transport protein; PFAM: cobalt transport protein; SPTR: A5ZYN3 Putative uncharacterized protein; PFAM: Cobalt transport protein.
  
 
 0.911
Apau_1611
ABC transporter related protein; COGs: COG1122 ABC-type cobalt transport system ATPase component; InterPro IPR003439:IPR003593:IPR017871; KEGG: tai:Taci_1153 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: D1B5U4 ABC transporter related protein; PFAM: ABC transporter.
 
 
 
 0.884
ecfA
ABC transporter related protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
 
 
 0.881
Apau_2100
ABC transporter related protein; COGs: COG1122 ABC-type cobalt transport system ATPase component; InterPro IPR017871:IPR003593:IPR003439; KEGG: cac:CAC0773 ABC-type cobalt transport protein ATPase component; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C7II51 ABC transporter related protein; PFAM: ABC transporter; TIGRFAM: cobalt transport protein ATP-binding subunit.
   
 
 0.859
Apau_0943
KEGG: tai:Taci_1254 hypothetical protein; SPTR: D1B644 Putative uncharacterized protein.
       0.536
rho
Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.
       0.536
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily.
       0.528
Apau_0948
KEGG: tai:Taci_1249 hypothetical protein; SPTR: D1B639 Putative uncharacterized protein.
 
     0.474
Apau_0946
Peptidase M23; COGs: COG0739 Membrane protein related to metalloendopeptidase; InterProIPR018392:IPR016047:IPR011055:IPR002482:IPR 000276; KEGG: tai:Taci_1251 peptidase M23; PFAM: Peptidase M23; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; SPTR: D1B641 Peptidase M23; PFAM: Peptidase family M23; LysM domain.
       0.458
Your Current Organism:
Aminomonas paucivorans
NCBI taxonomy Id: 584708
Other names: A. paucivorans DSM 12260, Aminomonas paucivorans DSM 12260, Aminomonas paucivorans str. DSM 12260, Aminomonas paucivorans strain DSM 12260
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