STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apau_0988Alanyl-tRNA synthetase, class IIc; COGs: COG0013 Alanyl-tRNA synthetase; InterPro IPR018164:IPR012947:IPR018163:IPR018165; KEGG: tai:Taci_0600 threonyl/alanyl tRNA synthetase SAD; PFAM: Alanyl-tRNA synthetase, class IIc-like; Threonyl/alanyl tRNA synthetase SAD; SPTR: D1B983 Threonyl/alanyl tRNA synthetase SAD; PFAM: Threonyl and Alanyl tRNA synthetase second additional domain; tRNA synthetases class II (A). (392 aa)    
Predicted Functional Partners:
Apau_0401
KEGG: tai:Taci_0287 hypothetical protein; SPTR: D1B8C1 Putative uncharacterized protein.
   
 0.975
Apau_1067
KEGG: tai:Taci_0662 hypothetical protein; SPTR: D1B9E5 Putative uncharacterized protein.
   
 0.975
Apau_0340
Signal transduction histidine kinase, LytS; KEGG: aoe:Clos_2437 hypothetical protein; SPTR: A8MJI7 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1393).
   
 0.965
Apau_0388
FecR protein; InterPro IPR006860; KEGG: maq:Maqu_2531 peptidoglycan-binding LysM; PFAM: FecR protein; SPTR: A1U3N7 Peptidoglycan-binding LysM; PFAM: FecR protein.
   
 0.965
Apau_1911
Tetratricopeptide TPR_2 repeat protein; InterProIPR011990:IPR019734:IPR013026:IPR001440:IPR 013105; KEGG: cyh:Cyan8802_1328 peptidase S1 and S6 chymotrypsin/Hap; PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SPTR: C7QP60 Peptidase S1 and S6 chymotrypsin/Hap; PFAM: Tetratricopeptide repeat.
   
 0.965
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
  
 
0.872
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
  
  
 0.848
pheT
COGs: COG0072 Phenylalanyl-tRNA synthetase beta subunit; InterProIPR004532:IPR002547:IPR005146:IPR005147:IPR 005121:IPR020825:IPR016027:IPR009061:IPR012340; KEGG: tai:Taci_0730 phenylalanyl-tRNA synthetase, beta subunit; PFAM: B3/4 domain protein; t-RNA-binding domain protein; tRNA synthetase B5; ferredoxin-fold anticodon-binding; PRIAM: Phenylalanine--tRNA ligase; SPTR: D1B9L0 Phenylalanyl-tRNA synthetase, beta subunit; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; PFAM: tRNA synthetase B5 domain; B3/4 domain; Ferredoxin-fold anticodon binding domain; Putative tRNA binding doma [...]
  
 
 0.840
valS
valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.
  
  
 0.797
Apau_0987
COGs: COG1254 Acylphosphatase; InterPro IPR001792:IPR017968; KEGG: ank:AnaeK_0729 acylphosphatase; PFAM: acylphosphatase; SPTR: B4UDH7 Acylphosphatase; PFAM: Acylphosphatase.
       0.774
Your Current Organism:
Aminomonas paucivorans
NCBI taxonomy Id: 584708
Other names: A. paucivorans DSM 12260, Aminomonas paucivorans DSM 12260, Aminomonas paucivorans str. DSM 12260, Aminomonas paucivorans strain DSM 12260
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