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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apau_1069KEGG: tai:Taci_0664 hypothetical protein; SPTR: D1B9E7 Putative uncharacterized protein; PFAM: FlgN protein. (148 aa)    
Predicted Functional Partners:
Apau_1068
InterPro IPR007412; KEGG: tai:Taci_0663 anti-sigma-28 factor FlgM family protein; PFAM: Anti-sigma-28 factor FlgM family protein; SPTR: D1B9E6 Anti-sigma-28 factor FlgM family protein; PFAM: Anti-sigma-28 factor, FlgM; TIGRFAM: flagellar biosynthesis anti-sigma factor FlgM.
       0.806
Apau_1070
COGs: COG1256 Flagellar hook-associated protein; InterPro IPR002371:IPR001444:IPR010930; KEGG: tai:Taci_0665 flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; SPTR: D1B9E8 Flagellar hook-associated protein FlgK; TIGRFAM: flagellar hook-associated protein FlgK; PFAM: Domain of unknown function (DUF1078); TIGRFAM: flagellar hook-associated protein FlgK.
       0.783
Apau_1071
Flagellin domain protein; COGs: COG1344 Flagellin and related hook-associated protein; InterPro IPR001492; KEGG: tai:Taci_0666 flagellin domain protein; PFAM: flagellin domain protein; SPTR: D1B9E9 Flagellin domain protein; PFAM: Bacterial flagellin N-terminal helical region; Bacterial flagellin C-terminal helical region; TIGRFAM: flagellar hook-associated protein 3.
       0.701
fliW
Protein of unknown function DUF180; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum.
       0.613
Apau_1066
COGs: COG1040 amidophosphoribosyltransferase; InterPro IPR000836; KEGG: tai:Taci_0661 phosphoribosyltransferase; PFAM: phosphoribosyltransferase; SPTR: C1TLD8 Predicted amidophosphoribosyltransferase; PFAM: Phosphoribosyl transferase domain.
       0.508
Apau_1067
KEGG: tai:Taci_0662 hypothetical protein; SPTR: D1B9E5 Putative uncharacterized protein.
       0.496
csrA
Carbon storage regulator, CsrA; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW.
       0.477
fliW-2
Protein of unknown function DUF180; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum.
       0.471
metK
Methionine adenosyltransferase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
       0.411
Your Current Organism:
Aminomonas paucivorans
NCBI taxonomy Id: 584708
Other names: A. paucivorans DSM 12260, Aminomonas paucivorans DSM 12260, Aminomonas paucivorans str. DSM 12260, Aminomonas paucivorans strain DSM 12260
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