STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apau_1107Protein of unknown function DUF107; COGs: COG1030 Membrane-bound serine protease (ClpP class); InterPro IPR002810; KEGG: gem:GM21_3060 protein of unknown function DUF107; PFAM: protein of unknown function DUF107; SPTR: C6E396 Putative uncharacterized protein; PFAM: NfeD-like. (431 aa)    
Predicted Functional Partners:
Apau_1108
SPFH domain, Band 7 family protein; COGs: COG0330 Membrane protease subunits stomatin/prohibitin homologs; InterPro IPR001107:IPR001972:IPR018080; KEGG: tai:Taci_0697 band 7 protein; PFAM: band 7 protein; SMART: band 7 protein; SPTR: D1B9I0 Band 7 protein; PFAM: SPFH domain / Band 7 family.
 
  
 0.971
radA
DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.
       0.710
leuS
COGs: COG0495 Leucyl-tRNA synthetase; InterProIPR002302:IPR015945:IPR002300:IPR013155:IPR 009008:IPR009080:IPR014729:IPR001412; KEGG: tai:Taci_0698 leucyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ia; Arginyl-tRNA synthetase, class Ic, core; tRNA synthetase valyl/leucyl anticodon-binding; SPTR: D1B9I1 Leucyl-tRNA synthetase; TIGRFAM: leucyl-tRNA synthetase; PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; TIGRFAM: leucyl-tRNA synthetase, eubacterial and mitochondrial family.
       0.508
Apau_1110
COGs: COG1466 DNA polymerase III delta subunit; InterPro IPR010372:IPR008921; KEGG: tai:Taci_0699 DNA polymerase III delta; PFAM: DNA polymerase III delta; SPTR: D1B9I2 DNA polymerase III delta; TIGRFAM: DNA polymerase III, delta subunit.
       0.508
Apau_1103
Fe-S cluster domain protein; COGs: COG4624 Iron only hydrogenase large subunit C-terminal domain; InterProIPR001450:IPR007202:IPR009016:IPR017900:IPR 017896; KEGG: tai:Taci_0692 Fe-S cluster domain protein; PFAM: Fe-S cluster domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: D1B9H5 Fe-S cluster domain protein; PFAM: Iron only hydrogenase large subunit, C-terminal domain; Putative Fe-S cluster.
       0.439
Apau_1104
HPr kinase; KEGG: tai:Taci_0693 HPr kinase; SPTR: D1B9H6 HPr kinase; PFAM: DRTGG domain.
       0.439
Apau_1105
PHP domain protein; InterPro IPR004013:IPR016195:IPR003141; KEGG: tai:Taci_0694 PHP domain protein; PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; SPTR: D1B9H7 PHP domain protein; PFAM: PHP domain.
       0.439
Apau_1101
HPr kinase; KEGG: tai:Taci_0690 hypothetical protein; SPTR: D1B9H3 Putative uncharacterized protein; PFAM: DRTGG domain.
       0.429
Apau_1102
COGs: COG2172 Anti-sigma regulatory factor (Ser/Thr protein kinase); InterPro IPR003594; KEGG: tai:Taci_0691 putative anti-sigma regulatory factor, serine/threonine protein kinase; PFAM: ATP-binding region ATPase domain protein; SPTR: D1B9H4 Putative anti-sigma regulatory factor, serine/threonine protein kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
       0.429
Your Current Organism:
Aminomonas paucivorans
NCBI taxonomy Id: 584708
Other names: A. paucivorans DSM 12260, Aminomonas paucivorans DSM 12260, Aminomonas paucivorans str. DSM 12260, Aminomonas paucivorans strain DSM 12260
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