STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apau_1273Alanine racemase domain protein; COGs: COG3457 amino acid racemase; InterPro IPR001608; KEGG: tai:Taci_0836 alanine racemase domain protein; PFAM: alanine racemase domain protein; SPTR: D1B9W6 Alanine racemase domain protein; PFAM: Alanine racemase, N-terminal domain. (354 aa)    
Predicted Functional Partners:
dacA
Protein of unknown function DUF147; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria.
       0.756
Apau_1275
YbbR family protein; COGs: COG4856 conserved hypothetical protein; InterPro IPR012505; KEGG: tai:Taci_0838 YbbR family protein; PFAM: YbbR family protein; SPTR: D1B9W8 YbbR family protein; PFAM: YbbR-like protein.
       0.756
nfo
Apurinic endonuclease Apn1; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin.
       0.753
glmM
Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.
       0.658
Apau_1277
COGs: COG1210 UDP-glucose pyrophosphorylase; InterPro IPR005835:IPR005771; KEGG: tai:Taci_0840 UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; SPTR: D1B9X0 UTP-glucose-1-phosphate uridylyltransferase; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase.
       0.547
Apau_1270
COGs: COG0469 Pyruvate kinase; InterProIPR015813:IPR015795:IPR008279:IPR011037:IPR 015794:IPR015793:IPR001697; KEGG: tai:Taci_0833 pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; PEP-utilising protein mobile region; SPTR: D1B9W3 Pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase, barrel domain; PEP-utilising enzyme, mobile domain; Pyruvate kinase, alpha/beta domain; TIGRFAM: pyruvate kinase; Belongs to the pyruvate kinase family.
       0.510
Apau_0969
COGs: COG0019 Diaminopimelate decarboxylase; InterPro IPR000183:IPR009006:IPR002433; KEGG: tai:Taci_0576 Orn/DAP/Arg decarboxylase 2; PFAM: Orn/DAP/Arg decarboxylase 2; SPTR: D1B959 Orn/DAP/Arg decarboxylase 2; PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
    
 0.508
Apau_0119
Dimethylargininase; COGs: COG1834 N-Dimethylarginine dimethylaminohydrolase; InterPro IPR003198; KEGG: shi:Shel_22890 N-dimethylarginine dimethylaminohydrolase; PFAM: amidinotransferase; PRIAM: Dimethylargininase; SPTR: C7N177 N-dimethylarginine dimethylaminohydrolase; PFAM: Amidinotransferase.
 
  
  0.498
Apau_1268
COGs: COG0587 DNA polymerase III alpha subunit; InterProIPR016195:IPR004013:IPR011708:IPR004365:IPR 004805:IPR003141; KEGG: tai:Taci_0831 DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; SMART: phosphoesterase PHP domain protein; SPTR: D1B9W1 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: Bacterial DNA polymerase III alpha subunit; PHP domain; TIGRFAM: DNA-directed DNA polymerase III (polc).
    
  0.470
Apau_2320
Dipeptidase; COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR011650:IPR001261:IPR010964:IPR002933; KEGG: dsy:DSY1623 hypothetical protein; PFAM: peptidase M20; SPTR: Q24X30 Putative uncharacterized protein; TIGRFAM: dipeptidase; PFAM: Peptidase family M20/M25/M40; TIGRFAM: dipeptidase, putative.
 
  
  0.455
Your Current Organism:
Aminomonas paucivorans
NCBI taxonomy Id: 584708
Other names: A. paucivorans DSM 12260, Aminomonas paucivorans DSM 12260, Aminomonas paucivorans str. DSM 12260, Aminomonas paucivorans strain DSM 12260
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.